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Added notebook for Colab; updated README to include both notebooks for macos and ubuntu #36

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merged 4 commits into from
Sep 11, 2024
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Added notebook for Colab; updated README to include both notebooks for macos and ubuntu #36

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fe7ac4b
Renamed old notebook
andreped Sep 11, 2024
40a8bb1
Added google colab notebook
andreped Sep 11, 2024
873d051
Added Google Colab badge to README
andreped Sep 11, 2024
4d8c36c
Added info on tutorials to README
andreped Sep 11, 2024
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3 changes: 2 additions & 1 deletion README.md
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[![License](https://img.shields.io/badge/License-MIT-green.svg)](https://opensource.org/licenses/MIT)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.13745169.svg)](https://doi.org/10.5281/zenodo.13745169)
<a href="https://colab.research.google.com/gist/andreped/0e945c30ebb01b309a36162d9ec133ae/vsi2tif-converting-olympus-wsi-to-generic-tiff-ubuntu-linux.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a>

Tool for converting WSIs from Olympus' cellSens VSI to Generic TIFF.

A simple Jupyter Notebook can be seen [here](https://github.com/andreped/vsi2tif/blob/main/notebooks/conversion_tutorial.ipynb) demonstrating how use the tool.
To quickly get started, see these notebooks ([Ubuntu Linux](https://github.com/andreped/vsi2tif/blob/main/notebooks/conversion_tutorial_ubuntu_linux.ipynb), [macOS](https://github.com/andreped/vsi2tif/blob/main/notebooks/conversion_tutorial_macos.ipynb)) for installing the tool, converting your first image, and verifying that the image works with OpenSlide.

## [Continuous integration](https://github.com/andreped/vsi2tif#continuous-integration)

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0 notebooks/conversion_tutorial.ipynb → notebooks/conversion_tutorial_macos.ipynb
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