v0.1.5

What's Changed

• Updated README with citation section and zenodo badge by @andreped in #33
• Change default JPEG compression quality from 85 to 87 by @andreped in #34
• Added default value to argument description in CLI; improved documentation by @andreped in #35

Full Changelog: v0.1.4...v0.1.5

v0.1.4

What's Changed

• Added integration test workflow by @andreped in #31

Full Changelog: v0.1.3...v0.1.4

v0.1.3

What's Changed

• Run build-test CI on all PRs by @andreped in #27
• Handling spaces in filenames by @dbouget in #26
• Dynamic plane export by @dbouget in #25
• CI run event standardization; typehint fixing; argparse refactoring by @andreped in #29
• Dynamic import handling to allow python debugging by @andreped in #30

New Contributors

• @dbouget made their first contribution in #26

Full Changelog: v0.1.2...v0.1.3

v0.1.2

What's Changed

• Added support for Windows; only installation steps needed updating by @andreped in #21
• Error handling during conversion; fixed env bug to allow vips to be accessible from subprocess by @andreped in #22

Full Changelog: v0.1.1...v0.1.2

v0.1.1

What's Changed

• Added simple Jupyter notebook example for getting started by @andreped in #11
• Fixed URL in README for notebook by @andreped in #12
• Include WSI visualization in notebooka by @andreped in #13
• Ignore overview image in batch mode by @andreped in #14
• Preserve input structure during conversion in batch mode by @andreped in #15
• Bump v0.1.1; support python>=3.6 by @andreped in #16
• Implemented release CI by @andreped in #17

Full Changelog: v0.1.0...v0.1.1

v0.1.0

Summary

First stable release of the vsi2tif command line tool for WSI conversion.

The tool allows for seamless conversion of WSis from the Olympus cellSens VSI format to Generic TIFF, which is a format compatible with commonly used packages for WSI processing, such as OpenSlide, FAST, and cuCUM.

What's Changed

• major rework - see mini changelog inside vsi2tif.py by @sekro in #1
• Fixed bug: Error when spaces present in filepath by @smistad in #2
• Quick fix to make compression of final image work by @sekro in #3
• Reimplemented tool into a python CLI by @andreped in #5
• Added single and batch conversion support by @andreped in #6
• Implemented linting shell scripts and CI workflow by @andreped in #7
• Implemented build and test CI for python CLI by @andreped in #8
• Fixed single wsi conversion; updated documentations by @andreped in #9
• Added support to set CLI verbosity by @andreped in #10

New Contributors

• @sekro made their first contribution in #1
• @smistad made their first contribution in #2
• @andreped made their first contribution in #5

Full Changelog: https://github.com/andreped/vsi2tif/commits/v0.1.0