Make deploy-preview equal to master #51
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| name: Render Book on PR to Main | |
| on: | |
| workflow_dispatch: # Allows the workflow to be triggered manually | |
| pull_request_target: | |
| types: [closed] | |
| branches: | |
| - deploy-preview | |
| jobs: | |
| render-and-commit: | |
| if: github.event.pull_request.merged == true && github.event.pull_request.base.ref == 'deploy-preview' && startsWith(github.event.pull_request.head.ref, 'handbook_v') | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| env: | |
| RENV_PATHS_ROOT: ~/.cache/R/renv | |
| R_LIBS_USER: ~/.cache/R/renv/Library | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: deploy-preview | |
| - name: Fetch latest changes | |
| run: | | |
| git fetch origin | |
| git reset --hard origin/deploy-preview | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.3.2' | |
| - name: Setup pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install system dependencies and R packages | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev libxml2-dev libssl-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libglpk-dev r-cran-rjava r-base-dev openjdk-11-jdk gdal-bin libgdal-dev libxslt1-dev libgit2-dev libgeos-dev libproj-dev libudunits2-dev libcairo2-dev libxt-dev libmagick++-dev libpoppler-cpp-dev libpq-dev libmysqlclient-dev libsqlite3-dev libssh2-1-dev libgmp3-dev libmpfr-dev libprotobuf-dev protobuf-compiler libgl1-mesa-dev libglu1-mesa-dev libpoppler-glib-dev libtbb-dev libsodium-dev libv8-dev libnetcdf-dev netcdf-bin libjq-dev libharfbuzz-dev libfribidi-dev libnode-dev jq | |
| sudo R CMD javareconf | |
| - name: Set up renv | |
| uses: r-lib/actions/setup-renv@v2 | |
| with: | |
| cache-version: 2 | |
| # - name: Install Bioconductor packages | |
| # run: | | |
| # Rscript -e 'install.packages("babelquarto", repos = c("https://ropensci.r-universe.dev", "https://cloud.r-project.org"))' | |
| # Rscript -e 'install.packages("babeldown", repos = c("https://ropensci.r-universe.dev", "https://cloud.r-project.org"))' | |
| # Rscript -e 'renv::snapshot()' | |
| - name: Install quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| with: | |
| version: 1.4.550 | |
| # - name: Print packages | |
| # run: Rscript -e 'names(installed.packages()[,3])' | |
| - name: Fix locale | |
| run: | | |
| export LANG=en_US.UTF-8 | |
| export LC_CTYPE=en_US.UTF-8 | |
| export LC_ALL=en_US.UTF-8 | |
| - name: Render the book | |
| # uses: quarto-dev/quarto-actions/render@v2 | |
| run: Rscript -e 'source("quarto_runfile.R")' | |
| continue-on-error: true | |
| # - name: Render the book | |
| # run: Rscript -e 'library(babelquarto); babelquarto::render_book()' | |
| # render-and-publish: | |
| # needs: setup-environment-packages | |
| # runs-on: ubuntu-latest | |
| # if: success() | |
| # steps: | |
| # - name: Check out repository | |
| # uses: actions/checkout@v4 | |
| - name: Commit results to main branch | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| git add . | |
| git commit -m "CI added changes `date +'%Y-%m-%d %H:%M:%S'`" || echo "No changes to commit" | |
| git push origin deploy-preview || echo "No changes to commit" | |
| # - name: Push changes | |
| # uses: ad-m/github-push-action@master | |
| # with: | |
| # branch: main | |
| # github_token: ${{ secrets.GITHUB_TOKEN }} | |
| # force: true | |
| # - name: Publish to Netlify | |
| # uses: quarto-dev/quarto-actions/publish@v2 | |
| # with: | |
| # target: netlify | |
| # NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} |