Skip to content

Commit

Permalink
Fix bioconda channel order
Browse files Browse the repository at this point in the history
Should be:
  - conda-forge
  - bioconda
  - defaults

and the --channel command with conda prioritises from left to right highest:lowest 

Currently the install instructions had bioconda as top priority instead of conda-forge so I've fixed this.

This was almost certainly my fault in the first place!
  • Loading branch information
fmaguire authored Sep 24, 2021
1 parent 040a781 commit 20e571e
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions README.rst
Original file line number Diff line number Diff line change
Expand Up @@ -113,25 +113,25 @@ Search for RGI package and show available versions:

.. code-block:: sh
$ conda search --channel bioconda --channel conda-forge --channel defaults rgi
$ conda search --channel conda-forge --channel bioconda --channel defaults rgi
Create a new conda environment

.. code-block:: sh
$ conda create --name rgi --channel bioconda --channel conda-forge --channel defaults rgi
$ conda create --name rgi --channel conda-forge --channel bioconda --channel defaults rgi
Install RGI package:

.. code-block:: sh
$ conda install --channel bioconda --channel conda-forge --channel defaults rgi
$ conda install --channel conda-forge --channel bioconda --channel defaults rgi
Install RGI specific version:

.. code-block:: sh
$ conda install --channel bioconda --channel conda-forge --channel defaults rgi=5.1.1
$ conda install --channel conda-forge --channel bioconda --channel defaults rgi=5.1.1
Remove RGI package:

Expand Down

1 comment on commit 20e571e

@raphenya
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thanks @fmaguire

Please sign in to comment.