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Add new primer schemes and change scheme naming format
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data/primer-schemes/MPXV/artic-mpox/v1.1.1-cladeI/primer.bed
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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| KJ642613.1 -33 0 MPXV_1_LEFT_1 3 + AACTCTAGAGGGTAAGAAAAATCAATCGTTTAT | ||
| KJ642613.1 6956 6983 MPXV_1_RIGHT_1 3 - ATTCTATTGATCTAACGCTGTACGACG | ||
| KJ642613.1 6918 6942 MPXV_2_LEFT_1 1 + CCATGTTCGAGCATACTAGCCATG | ||
| KJ642613.1 9382 9406 MPXV_2_RIGHT_1 1 - GACAGGATCGAATTCCATATCCGC | ||
| KJ642613.1 9242 9272 MPXV_3_LEFT_1 2 + AAAGTTGTGGTAGTATGATCTCCATATTTA | ||
| KJ642613.1 11766 11792 MPXV_3_RIGHT_1 2 - TTGAAAACAATGAACTCGGATGTCCT | ||
| KJ642613.1 11726 11756 MPXV_4_LEFT_1 1 + GATATCGCCGAATGTCATATACTCAATTAG | ||
| KJ642613.1 14297 14328 MPXV_4_RIGHT_1 1 - GGATAAACTATTATCTGCCCATGATACATTT | ||
| KJ642613.1 14177 14210 MPXV_5_LEFT_1 2 + GTACACTGTATGATAAGATACATATTCTGACAA | ||
| KJ642613.1 16715 16745 MPXV_5_RIGHT_1 2 - GCTAAAGATATAAATACGATGTCATTCGAC | ||
| KJ642613.1 16662 16692 MPXV_6_LEFT_1 1 + ACAGTGAGTTTATCTTTCTTTGAAGTGATA | ||
| KJ642613.1 21061 21095 MPXV_6_RIGHT_1 1 - CGTGATATTTTCTATCAATGGGGAAATTATTACG | ||
| KJ642613.1 21014 21046 MPXV_7_LEFT_1 2 + CTTTAGATGGTGATCCTGAATGTGTTTAAAAA | ||
| KJ642613.1 23523 23554 MPXV_7_RIGHT_1 2 - AAACAAAACAAATTCGGAGATAGTCCTCTTA | ||
| KJ642613.1 23492 23513 MPXV_8_LEFT_1 1 + TGCGCTGGGCTCAATGTCTTA | ||
| KJ642613.1 26042 26075 MPXV_8_RIGHT_1 1 - AGCCATATATCTACTAATCAGATCTATTAGAGA | ||
| KJ642613.1 25963 25990 MPXV_9_LEFT_1 2 + ATGTCTGAAACGAGACGCTAATTAGTG | ||
| KJ642613.1 28257 28284 MPXV_9_RIGHT_1 2 - CCGCTTTATTGTCATGTATCGGAAATG | ||
| KJ642613.1 28197 28230 MPXV_10_LEFT_1 1 + CCGCCTTTGAATAAATAATAGGAATAAAGTTCA | ||
| KJ642613.1 30684 30717 MPXV_10_RIGHT_1 1 - TGAAGTTAATACTATACTAATGAACAACAAGGG | ||
| KJ642613.1 30647 30674 MPXV_11_LEFT_1 2 + GGTAATGAATGAAATTGTCGCCAATCT | ||
| KJ642613.1 33159 33187 MPXV_11_RIGHT_1 2 - AATGTTACCAATCCGTTTGATTTCATGG | ||
| KJ642613.1 33103 33130 MPXV_12_LEFT_1 1 + GTATTCACCCACACGTTTTTCGAAAAA | ||
| KJ642613.1 35620 35653 MPXV_12_RIGHT_1 1 - TAATCCTCCACCAAAATAGAGTATATCATCTCA | ||
| KJ642613.1 35577 35610 MPXV_13_LEFT_1 2 + AGTAAAAAGTTCACATTGAAACTATGTCAGTAG | ||
| KJ642613.1 38096 38127 MPXV_13_RIGHT_1 2 - TTCTGCATTATTGTAATTCGTATGCTGATAC | ||
| KJ642613.1 38016 38049 MPXV_14_LEFT_1 1 + CATTCAATAGGGTAGTGATATTTGTATGTATGA | ||
| KJ642613.1 40545 40572 MPXV_14_RIGHT_1 1 - TCCATTGATCGATATTATACGAAAGCG | ||
| KJ642613.1 40500 40523 MPXV_15_LEFT_1 2 + CCGTATCGTTCTAAAGCCAGTGC | ||
| KJ642613.1 43025 43055 MPXV_15_RIGHT_1 2 - GATGAACAAAATGGGTATTCTAGACAAAAA | ||
| KJ642613.1 42994 43015 MPXV_16_LEFT_1 1 + TAGCCCCGCAATACTCCTCAT | ||
| KJ642613.1 45512 45542 MPXV_16_RIGHT_1 1 - TCAGAGTTTTAAATCCTCAAAATGAATAGG | ||
| KJ642613.1 45448 45481 MPXV_17_LEFT_1 2 + CTCTGCCTAAATAGGTTTCTATAATCTTTAATG | ||
| KJ642613.1 47970 47998 MPXV_17_RIGHT_1 2 - AACTCTCCTACATTTTATGCCTGTGTAG | ||
| KJ642613.1 47930 47960 MPXV_18_LEFT_1 1 + GATTTTCCATCTGCCTTATCGAATACTCTT | ||
| KJ642613.1 50699 50726 MPXV_18_RIGHT_1 1 - TTCCCCTCCGTGAAATAATGGATTAAG | ||
| KJ642613.1 50657 50689 MPXV_19_LEFT_1 2 + GACGAATTAGGAGAACTTATAGGCGTAAATTA | ||
| KJ642613.1 53157 53189 MPXV_19_RIGHT_1 2 - TTATAGTCTCCTGTTTGATGTATATACCTAGC | ||
| KJ642613.1 53114 53147 MPXV_20_LEFT_1 1 + ATTCAGATACGTCTATACAGATAATACCAAACA | ||
| KJ642613.1 55633 55665 MPXV_20_RIGHT_1 1 - TAACAGGAGAGAAGATTATCTTTAGATCTCCA | ||
| KJ642613.1 55590 55623 MPXV_21_LEFT_1 2 + GATTTCTCTCATAAATACAGAGATGTACAGCTT | ||
| KJ642613.1 58106 58140 MPXV_21_RIGHT_1 2 - TCTCTAGAGGATATTCTCTCACATATAGATAATG | ||
| KJ642613.1 58067 58096 MPXV_22_LEFT_1 1 + TCTCRACATCTTCAATAGATACCTTGCTA | ||
| KJ642613.1 60595 60617 MPXV_22_RIGHT_1 1 - TCAATAGTATCAGTGCCCGTGC | ||
| KJ642613.1 60551 60582 MPXV_23_LEFT_1 2 + CATCTACCATTTCATTGATTTTAGCAGTGAA | ||
| KJ642613.1 63070 63101 MPXV_23_RIGHT_1 2 - ATCTATTTATAGCTCTTTGGATTCCTGATCT | ||
| KJ642613.1 63035 63057 MPXV_24_LEFT_1 1 + ACCACTCTCCRTCATCCTTCAC | ||
| KJ642613.1 65554 65585 MPXV_24_RIGHT_1 1 - TGGACCAAAAAGTCAATTAATGTGATATGTG | ||
| KJ642613.1 65500 65533 MPXV_25_LEFT_1 2 + AACAAAGTTATTCATCGTCGTCTACTATTCTAT | ||
| KJ642613.1 68033 68066 MPXV_25_RIGHT_1 2 - CCTTACCATGAATAATATACATATCATACGGTA | ||
| KJ642613.1 67990 68023 MPXV_26_LEFT_1 1 + GTTGCACAGTGTCACGAATATAAATCATATTTA | ||
| KJ642613.1 70507 70540 MPXV_26_RIGHT_1 1 - GATATCTACTTGGGAATTTCTAATTTCGGATTC | ||
| KJ642613.1 70469 70497 MPXV_27_LEFT_1 2 + AAGTGAGCAATTCCCAAGATTTCATCTA | ||
| KJ642613.1 72982 73014 MPXV_27_RIGHT_1 2 - AGTTTTAACTTCTGAAACATCAATCTCCTTAC | ||
| KJ642613.1 72947 72972 MPXV_28_LEFT_1 1 + GTTACCCTGCCAATTAATGTACGCA | ||
| KJ642613.1 75470 75497 MPXV_28_RIGHT_1 1 - CTAGATGAATGACGGTTCTACCACAAC | ||
| KJ642613.1 75385 75418 MPXV_29_LEFT_1 2 + CCTATTAGGACAGATACTACTATTTGTYTAAGT | ||
| KJ642613.1 77907 77940 MPXV_29_RIGHT_1 2 - GTTTGTTAGAAGTCAGTCTAGTACTATTATAGT | ||
| KJ642613.1 77866 77895 MPXV_30_LEFT_1 1 + TGGCGCTAGTCATCACATTAACTATTTTT | ||
| KJ642613.1 80382 80412 MPXV_30_RIGHT_1 1 - TTTGAATCGCATCAAACTAATCACAAAGTC | ||
| KJ642613.1 80341 80372 MPXV_31_LEFT_1 2 + TTACAGATGGAAGGGTCAAACTTAATAAAGG | ||
| KJ642613.1 82859 82889 MPXV_31_RIGHT_1 2 - ATGTATCTGATTGTACCATTTCATTGGGAA | ||
| KJ642613.1 82798 82826 MPXV_32_LEFT_1 1 + GCTACTCGTTTGGAATCACAGACATTAT | ||
| KJ642613.1 85316 85348 MPXV_32_RIGHT_1 1 - ATTAAGAATATAACCTCTTCCTTCTGGATCCT | ||
| KJ642613.1 85274 85306 MPXV_33_LEFT_1 2 + GAGTATTGGGTAGAGTCTTACCTTACTATCTT | ||
| KJ642613.1 87788 87821 MPXV_33_RIGHT_1 2 - CTAATTTTGTTTTGCTATCCGTTAATGATTTCC | ||
| KJ642613.1 87731 87764 MPXV_34_LEFT_1 1 + ATCCAGTCTTTAATGAATTAACGAGATATATGC | ||
| KJ642613.1 90262 90292 MPXV_34_RIGHT_1 1 - CAGCGCTTTATCTTTAATATTATCATGTCT | ||
| KJ642613.1 90219 90249 MPXV_35_LEFT_1 2 + TGTATTTCATTACCCAAGTTTGAGATTTCA | ||
| KJ642613.1 92748 92778 MPXV_35_RIGHT_1 2 - GTGTTAATAACCCTACTGTTTCATTCTCCT | ||
| KJ642613.1 92687 92717 MPXV_36_LEFT_1 1 + GCGGTTTTTATGTTAATGGAAACTATGTTT | ||
| KJ642613.1 95210 95243 MPXV_36_RIGHT_1 1 - CTATAAACTTAATAGGTACAACAACGGACTTAA | ||
| KJ642613.1 95130 95160 MPXV_37_LEFT_1 2 + GATTGTGTTATATAACGGCGTTAATTATCT | ||
| KJ642613.1 97657 97680 MPXV_37_RIGHT_1 2 - TTTGGTGATTCGAACGGTACACC | ||
| KJ642613.1 97620 97647 MPXV_38_LEFT_1 1 + TGTGTGTGGTATAGATCCGTATCCAAA | ||
| KJ642613.1 100118 100151 MPXV_38_RIGHT_1 1 - TTTGTACCATTTAACCAACAAGTATAGAAATGC | ||
| KJ642613.1 100074 100108 MPXV_39_LEFT_1 2 + ACGAGGGATTAGATGGTAAAATACAGAATAATAG | ||
| KJ642613.1 102588 102616 MPXV_39_RIGHT_1 2 - GTCTTCACGAATTTCTATTTTCTTGGCC | ||
| KJ642613.1 102545 102572 MPXV_40_LEFT_1 1 + CCGTATATAAGGCGTATCTCCATAGAG | ||
| KJ642613.1 105040 105073 MPXV_40_RIGHT_1 1 - CAATAATTTGATCACTCGTTAGAGATATTCGTC | ||
| KJ642613.1 104943 104976 MPXV_41_LEFT_1 2 + GACAATTCTTTTGTATTCATAGACACTCGTTTT | ||
| KJ642613.1 107462 107489 MPXV_41_RIGHT_1 2 - CGTAAGCGATAGTTGGTTGAAAGATAG | ||
| KJ642613.1 107387 107420 MPXV_42_LEFT_1 1 + TTAGTGACGGACTTAACATGAGACATAAATAAA | ||
| KJ642613.1 109909 109937 MPXV_42_RIGHT_1 1 - GGTTAAGTCTCACGTAGCTCTTAGAGAA | ||
| KJ642613.1 109863 109896 MPXV_43_LEFT_1 2 + CCTTATCTTCATAGAATACTAAAGGCAATAAAG | ||
| KJ642613.1 112376 112409 MPXV_43_RIGHT_1 2 - TAGAAAACCAGAAACTAATTACTACATTCATCC | ||
| KJ642613.1 112340 112366 MPXV_44_LEFT_1 1 + GCAGGAAGTTTAATACCGAATAGTGC | ||
| KJ642613.1 114857 114890 MPXV_44_RIGHT_1 1 - CCTAAAATCATACTGTTTCAGAATAACGACATC | ||
| KJ642613.1 114791 114824 MPXV_45_LEFT_1 2 + CGACGTCAATTGTCTATAAATCAGAGTATAAAT | ||
| KJ642613.1 117314 117344 MPXV_45_RIGHT_1 2 - ATTTGGATCGTACGAAGATGTAGATAATAA | ||
| KJ642613.1 117254 117286 MPXV_46_LEFT_1 1 + GTAATGTCCAAATCTAGTTGTGGAAATACTTC | ||
| KJ642613.1 119756 119785 MPXV_46_RIGHT_1 1 - TCGGAACCGATAAGTATCTTGGATAGAAT | ||
| KJ642613.1 119709 119742 MPXV_47_LEFT_1 2 + CCATCATTTCATTAATAGTATACGCAGAAAAGA | ||
| KJ642613.1 122227 122259 MPXV_47_RIGHT_1 2 - CTTATTAACTTCGGTTGATTTATACGGAGTCT | ||
| KJ642613.1 122148 122181 MPXV_48_LEFT_1 1 + GTGGTTAATCTTAGAAATCAACGATCTAATACA | ||
| KJ642613.1 124667 124698 MPXV_48_RIGHT_1 1 - GCATTATACGTCTTTTGTAACGACCATAAAG | ||
| KJ642613.1 124634 124657 MPXV_49_LEFT_1 2 + TTGGATAATTCGCGCACCAACAA | ||
| KJ642613.1 127147 127174 MPXV_49_RIGHT_1 2 - AGTGCCGGAATAAAATAAGGTGGATAC | ||
| KJ642613.1 127102 127133 MPXV_50_LEFT_1 1 + CCAGATATGGTCAAATCRATTAAGGAACTAA | ||
| KJ642613.1 129608 129640 MPXV_50_RIGHT_1 1 - TTTTCGATCTCTATATGAATTACCAGACATGA | ||
| KJ642613.1 129571 129598 MPXV_51_LEFT_1 2 + CATACATCTGCTGCCAAAGTTATTTGC | ||
| KJ642613.1 132095 132121 MPXV_51_RIGHT_1 2 - CTCTAATTCATCATGTGCTAACGTCT | ||
| KJ642613.1 132062 132084 MPXV_52_LEFT_1 1 + GTCATCGCATCCTAACGTACGG | ||
| KJ642613.1 134584 134612 MPXV_52_RIGHT_1 1 - ACAGATTTCCGAATATCAGGAGCATAAC | ||
| KJ642613.1 134544 134574 MPXV_53_LEFT_1 2 + ATATTATCGGATTCGGTATTGTTACTCGAG | ||
| KJ642613.1 136613 136640 MPXV_53_RIGHT_1 2 - AGGAGATAAGGAGGACCAACCAATTAA | ||
| KJ642613.1 136574 136603 MPXV_54_LEFT_1 1 + GCATCATCTTTATCATTATTAGGTGGGGG | ||
| KJ642613.1 139130 139162 MPXV_54_RIGHT_1 1 - GCAAATACATGCATCAGTAGAAAACATAGAAA | ||
| KJ642613.1 139086 139119 MPXV_55_LEFT_1 2 + TAGGATATGCTTTCATAAAGTCCCTAATAACTT | ||
| KJ642613.1 141600 141633 MPXV_55_RIGHT_1 2 - ACTCCATGATATGATAAATCCATGTAAAATAGC | ||
| KJ642613.1 141559 141590 MPXV_56_LEFT_1 1 + GTTGTATTGGGGAAGGTAACAATTAATGATC | ||
| KJ642613.1 144089 144118 MPXV_56_RIGHT_1 1 - ATATCTAACATGATATCATAGTCGCATGC | ||
| KJ642613.1 144037 144070 MPXV_57_LEFT_1 2 + CAACATTTATAGTATTTGTACAGCATACAGATC | ||
| KJ642613.1 146557 146590 MPXV_57_RIGHT_1 2 - GCTTATACATCGATATCAGTTGTATTTTCTACT | ||
| KJ642613.1 146515 146538 MPXV_58_LEFT_1 1 + CATGGCAATAACGCAACCAAACA | ||
| KJ642613.1 149110 149135 MPXV_58_RIGHT_1 1 - GAGCTGTATGTCAATACCGGCATTA | ||
| KJ642613.1 149004 149036 MPXV_59_LEFT_1 2 + GTGTACGTGCAACTGGTAATTAAAATAAAAAG | ||
| KJ642613.1 151533 151566 MPXV_59_RIGHT_1 2 - GTAGTGTATATCATTAACTTCATTACGTATGAC | ||
| KJ642613.1 151493 151523 MPXV_60_LEFT_1 1 + AAATGCATTAGTTTACTTTTCTACTCAGCA | ||
| KJ642613.1 154044 154077 MPXV_60_RIGHT_1 1 - ATTATCGTCTAATGAATTAATCAACTCGTTCTG | ||
| KJ642613.1 154000 154034 MPXV_61_LEFT_1 2 + CTTTCCTAGATACTGCATATACTATCATAGATCA | ||
| KJ642613.1 156515 156546 MPXV_61_RIGHT_1 2 - AGAAATCAAACAGGAGAATAATCAATGATGC | ||
| KJ642613.1 155955 155988 MPXV_62_LEFT_1 1 + TCTACTCATCTAAACGATTTAGTAAACTTGACT | ||
| KJ642613.1 157933 157961 MPXV_62_RIGHT_1 1 - AACTTAAACCACCATCAAAAATCCATGT | ||
| KJ642613.1 157875 157908 MPXV_63_LEFT_1 2 + GATGGATGAGATATACAGCTATTAATTTCGAAA | ||
| KJ642613.1 158151 158181 MPXV_63_RIGHT_1 2 - CTATGTTTAAACGGTTCGCATTTATACATT | ||
| KJ642613.1 158091 158124 MPXV_64_LEFT_1 1 + CGATAAAGAAAAAGATTGTTGGACATTGGATAA | ||
| KJ642613.1 160613 160640 MPXV_64_RIGHT_1 1 - CGTCTAGATACAACGTATCCTTTATGC | ||
| KJ642613.1 160570 160603 MPXV_65_LEFT_1 2 + ATAAAATGGATAACGGTACTCTAGAATTTACAC | ||
| KJ642613.1 163095 163127 MPXV_65_RIGHT_1 2 - CGTCCATTTTCAAGCATTAGTCTTATACTATT | ||
| KJ642613.1 163022 163052 MPXV_66_LEFT_1 1 + ACATAATCTCGGGTTATCATCCATTAATAT | ||
| KJ642613.1 165553 165581 MPXV_66_RIGHT_1 1 - GCATCGTAGATATCAACATCCACTGAAG | ||
| KJ642613.1 165436 165468 MPXV_67_LEFT_1 2 + CATAAATTGCTACCGTGAATATAAATCCGTTA | ||
| KJ642613.1 167987 168009 MPXV_67_RIGHT_1 2 - ATGTCTCCCGCCTCTTGATCAC | ||
| KJ642613.1 167946 167977 MPXV_68_LEFT_1 1 + TATTCCAAAATGTTCCAGAACTCTCTGTATT | ||
| KJ642613.1 170530 170562 MPXV_68_RIGHT_1 1 - CCATTAGCTCCATAATACAGTATTGTCAATAC | ||
| KJ642613.1 170492 170520 MPXV_69_LEFT_1 2 + GAAAGAATGTATTCATTTCTCCAGCGTC | ||
| KJ642613.1 173013 173045 MPXV_69_RIGHT_1 2 - AGGATTAATGTTTAACCAGGATGTAATAACAC | ||
| KJ642613.1 172961 172992 MPXV_70_LEFT_1 1 + GGAGACGGTAGAATAAGTGTAGCAAATAAAA | ||
| KJ642613.1 175478 175511 MPXV_70_RIGHT_1 1 - CTGATCTATCATAACCATAGAATTCATCAACAA | ||
| KJ642613.1 175435 175468 MPXV_71_LEFT_1 2 + CTAGTAGATTACGACATTAAACTCAAAACCAAT | ||
| KJ642613.1 177971 177993 MPXV_71_RIGHT_1 2 - GTGTTGGGTACGACCGCTTATA | ||
| KJ642613.1 177903 177934 MPXV_72_LEFT_1 1 + ATGTTACCCGATATACCCATAGCATTATCTA | ||
| KJ642613.1 180442 180468 MPXV_72_RIGHT_1 1 - TCTCCTCGATAATAAGCCATATCTGG | ||
| KJ642613.1 180403 180428 MPXV_73_LEFT_1 2 + TTAACCGTGCGTAAAATGACTCGAG | ||
| KJ642613.1 182927 182956 MPXV_73_RIGHT_1 2 - ATAATCATCATGTTGAGGAAGTGGATTAC | ||
| KJ642613.1 182888 182915 MPXV_74_LEFT_1 1 + CTACAAATGATGGTCTACAGAGTCCAA | ||
| KJ642613.1 185407 185435 MPXV_74_RIGHT_1 1 - AATGATGAAAACAAGCACGTGGTTTATC | ||
| KJ642613.1 185368 185395 MPXV_75_LEFT_1 2 + GGTTGGTTAAAATCTAGTGGYTATGGG | ||
| KJ642613.1 187904 187927 MPXV_75_RIGHT_1 2 - GTTTAGGACGGAACCCAAAAGGG | ||
| KJ642613.1 187803 187837 MPXV_76_LEFT_1 1 + CTGGATAGACATAAATATCCTCCTCGTAATAATG | ||
| KJ642613.1 190331 190360 MPXV_76_RIGHT_1 1 - GCTATCGAACCATTTTTGTAGTCTAAAGC | ||
| KJ642613.1 190262 190292 MPXV_77_LEFT_1 3 + GCGACGAATATACTGAAATTGATAGATCGA | ||
| KJ642613.1 196441 196474 MPXV_77_RIGHT_1 3 - AACTCTAGAGGGTAAGAAAAATCAATCGTTTAT |
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