artic-mpxv-illumina-nf v1.4.5

Squirrel version updated from 1.0.10 to 1.0.12

What's Changed

• update squirrel version by @rmcolq in #10

artic-mpxv-illumina-nf v1.4.4

Add artic-inrb-mpox scheme

Full Changelog: 1.4.3...1.4.4

artic-mpxv-illumina-nf v1.4.3

Ignore trim_galore exit 255 (file empty)

Full Changelog: 1.4.2...1.4.3

artic-mpxv-illumina-nf v1.4.2

What's Changed

• Quote value of HOSTILE_CACHE_DIR environment variable by @pvanheus in #9

New Contributors

• @pvanheus made their first contribution in #9

Full Changelog: 1.4.1...1.4.2

artic-mpxv-illumina-nf v1.4.1

Full Changelog: 1.4.0...1.4.1

artic-mpxv-illumina-nf v1.4.0

What's Changed

• 1.4.0 Release PR by @BioWilko in #8

Full Changelog: 1.3.1...1.4.0

artic-mpxv-illumina-nf v1.3.1

Fix conda/mamba profile and re-enable.

What's Changed

• Pre 1.3.1 PR by @BioWilko in #5

Full Changelog: 1.3.0...1.3.1

artic-mpxv-illumina-nf v1.3.0

Improve experience when executing the pipeline from CLI and add an explicit step where the Hostile T2T reference is downloaded before any dehosting is attempted, this will finish instantly if the reference has been previously downloaded to the store_dir directory.

Full Changelog: 1.2.3...1.3.0

artic-mpxv-illumina-nf v1.2.3

Full Changelog: 1.2.2...1.2.3

artic-mpxv-illumina-nf v1.2.2

Full Changelog: 1.2.1...1.2.2