Add min / max length for itm scheme

artic-network · Aug 22, 2024 · 40d3b01 · 40d3b01
1 parent 899a589
commit 40d3b01
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/main.nf b/main.nf
@@ -372,21 +372,21 @@ workflow {
 
       if (!params.min_len) {
           params.remove('min_len')
-          if (params.scheme_version.startsWith("yale-mpox")) {
+          if (params.scheme_version.startsWith("yale-mpox") || params.scheme_version.startsWith("itm-mpox")) {
               params._min_len = 1500
           } else {
-              params._min_len = 400
+              params._min_len = 1500
           }
       } else {
           params._min_len = params.min_len
           params.remove('min_len')
       }
       if (!params.max_len) {
           params.remove('max_len')
-          if (params.scheme_version.startsWith("yale-mpox")){
+          if (params.scheme_version.startsWith("yale-mpox") || params.scheme_version.startsWith("itm-mpox")) {
               params._max_len = 3000
           } else {
-              params._max_len = 700
+                params._max_len = 2500
           }
       } else {
           params._max_len = params.max_len

diff --git a/nextflow.config b/nextflow.config
@@ -58,7 +58,7 @@ manifest {
     description     = 'Run the ARTIC SARS-CoV-2 methodology on multiplexed MinION, GridION, and PromethION data.'
     mainScript      = 'main.nf'
     nextflowVersion = '>=23.04.2'
-    version         = 'v1.0.5'
+    version         = 'v1.0.6'
 }
 
 epi2melabs {