reinstaing the temp paf file, had removed the temp for testing

artic-network · Jan 21, 2020 · 000cf6e · 000cf6e
1 parent 041188a
commit 000cf6e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/default_protocol/pipelines/demux_map/rules/map.smk b/default_protocol/pipelines/demux_map/rules/map.smk
@@ -3,7 +3,7 @@ rule minimap2:
         fastq= config["input_path"] + "/{filename_stem}.fastq",
         ref= config["references_file"]
     output:
-        config["output_path"] + "/temp/{filename_stem}.paf"
+        temp(config["output_path"] + "/temp/{filename_stem}.paf")
     shell:
         """
         minimap2 -x map-ont \