Merge pull request #72 from artic-network/main_unstable

Main unstable
artic-network · Sep 24, 2024 · 0f4a158 · 0f4a158
2 parents 60bcbd9 + cfe0b22
commit 0f4a158
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/bin/report.py b/bin/report.py
@@ -121,8 +121,8 @@ def __init__(self, file_name=None):
         self.domains = defaultdict(int)
         if file_name:
             self.load_df(file_name)
-            self.unclassified = self.entries[0].count
-            self.classified = self.entries[1].count
+            self.unclassified = self.entries["0"].count
+            self.classified = self.entries["1"].count
             self.total = self.classified + self.unclassified
 
     def print(self):
@@ -392,4 +392,4 @@ def check_host(self, host_dict):
                 sys.stderr.write(
                     f"ERROR: found {self.entries[host_id].count} reads corresponding to host {self.entries[host_id].name} with taxon_id {host_id}, max allowed is {max_host_count}\n"
                     )
-                sys.exit(2)
+                sys.exit(2)
diff --git a/nextflow.config b/nextflow.config
@@ -32,7 +32,7 @@ manifest {
     description     = 'Classify metagenomic sequence data from human respiratory infections.'
     mainScript      = 'main.nf'
     nextflowVersion = '>=20.10.0'
-    version         = 'v1.3.0'
+    version         = 'v1.3.1'
 }
 
 profiles {