Update README.md

README.md

@@ -3,6 +3,8 @@ Workflow to run [squirrel](https://github.com/aineniamh/squirrel) through a GUI
 
 **S**ome **QUI**ck **R**earranging to **R**esolve **E**volutionary **L**inks
 
+A full walkthrough of this workflow can be found [here](https://artic.network/mpxv/mpxv-phylogenetics-epi2me-sop.html)
+
 Squirrel allows the following analyses of MPXV Clade I or Clade II sequences:
 1. Generate an alignment 
 2. Run basic sequence QC on the alignment looking for standard errors arising from consensus building pipelines or low sequencing depth
@@ -24,4 +26,4 @@ If you check the `run_phylo` option, it will construct a tree using IQtree. You
 If you check both the `run_phylo` and `seq_qc` options, and additional step is performed to generate a more informed mask file.
 
 ## More information
-More information on the input parameters and methods can be found on [the main page for squirrel](https://github.com/aineniamh/squirrel).
+More information on the input parameters and methods can be found on [the main page for squirrel](https://github.com/aineniamh/squirrel).