Force Matrix install for sanitizer checks #69
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: push | |
| name: R-CMD-check-with-sanitizers | |
| jobs: | |
| pre-condition: | |
| name: Check hash of src files | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - id: cache_hit | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| src | |
| key: san-${{ hashFiles('src/**') }} | |
| outputs: | |
| run_check: ${{ steps.cache_hit.outputs.cache-hit }} | |
| R-CMD-check: | |
| needs: pre-condition | |
| if: needs.pre-condition.outputs.run_check != 'true' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, img: 'r-devel-san'} | |
| - {os: ubuntu-latest, img: 'r-devel-ubsan-clang'} | |
| runs-on: ${{ matrix.config.os }} | |
| container: rocker/${{ matrix.config.img }}:latest | |
| name: ${{ matrix.config.os }} (${{ matrix.config.img }}) | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/cache@v4 | |
| with: | |
| path: | | |
| /usr/local/lib/R/site-library | |
| key: ${{ matrix.config.img }} | |
| - name: Install dependencies | |
| env: | |
| ASAN_OPTIONS: "detect_odr_violation=0" | |
| shell: Rscriptdevel {0} | |
| run: | | |
| install.packages("remotes") | |
| library("remotes") | |
| install_cran(c("bigmemory")) | |
| install_cran(c("Matrix", "codetools", "cluster", "lattice", "class"), force = TRUE) | |
| update(dev_package_deps(dependencies = TRUE)) | |
| - name: Check with sanitizers | |
| env: | |
| NOT_CRAN: false | |
| ASAN_OPTIONS: "detect_leaks=0:detect_odr_violation=0" | |
| run: | | |
| Rdevel CMD build --no-build-vignettes --no-manual . | |
| Rdevel --vanilla CMD check *.tar.gz --as-cran --no-manual | |
| continue-on-error: true | |
| - name: Show testthat output | |
| if: always() | |
| run: find *.Rcheck -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ matrix.config.img }}-results | |
| path: | | |
| *.Rcheck/*.out | |
| *.Rcheck/*.log |