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unix: patch configure.ac instead of configure
Python 3.11 introduces a configure based mechanism for configuring extension modules. It is looking like we'll need to bulk modify behavior to get it to work with our opinionated way of statically linking extension modules. In preparation for that, this commit changes all our configure patches to patch `configure.ac` instead of `configure` so we can make changes at the source without bloating patch size. As part of this, I also moved the patches to standalone files, as having to copy inline patches with tabs was historically annoying. This approach is much easier.
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