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@ay-lab ay-lab released this 28 Aug 01:02
· 23 commits to master since this release
0.1
d7a2a77

ATAC-seq processing pipeline, supporting either fastq or bam files, and single or paired end reads.
Alignment statistics, quality thresholding of reads, and de-duplication is performed.
Peak calling using MACS2 is done.
QC metrics suggested in Greenleaf et al 2013 are also implemented, and the package ATACseqQC is also integrated for this purpose.
UCSC compatible tracks are also created for visualization.

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