Print network labels

bacpop · Nov 15, 2024 · 86257c6 · 86257c6
1 parent e4f3290
commit 86257c6
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/PopPUNK/plot.py b/PopPUNK/plot.py
@@ -561,13 +561,12 @@ def outputsForCytoscape(G, G_mst, isolate_names, clustering, outPrefix, epiCsv,
     # Save each component too (useful for very large graphs)
     component_assignments, component_hist = gt.label_components(G)
     print("All assignments: " + str(component_assignments))
-    isolate_labels = isolateNameToLabel(G_mst.vp.id)
     for component_idx in range(len(component_hist)):
         remove_list = []
         for vidx, v_component in enumerate(component_assignments.a):
             print("Index: " + str(vidx))
             print("Component: " + str(v_component))
-            print("Name: " + str(isolate_labels[vidx]))
+            print("Name: " + str(seqLabels[vidx]))
             if v_component != component_idx:
                 remove_list.append(vidx)
         G.remove_vertex(remove_list)