Code

Update from master#288

Code

Merged

nickjcroucher merged 49 commits intodb_plotsbacpop/PopPUNK:db_plotsfrom masterbacpop/PopPUNK:masterCopy head branch name to clipboardNov 14, 2023

+313-33

Commits

Commits on Mar 6, 2023

• Increase default mandrake maxiter by 10x

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  johnlees

  committed
  7595d96

• Merge pull request #256 from bacpop/max-iter

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  johnlees

  authored
  2829751

Commits on Mar 8, 2023

• Correct database content filenames

  HarryHung

  authored
  8eeff8a

• Merge pull request #257 from HarryHung/patch-1

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  johnlees

  authored
  5675650

Commits on Mar 22, 2023

• Create poppunk_iterate.rst

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  BZhao95

  authored
  9431fc0

• Add files via upload

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  BZhao95

  authored
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• Update model_fitting.rst

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  BZhao95

  authored
  1effd4f

• Update poppunk_iterate.py

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  BZhao95

  authored
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Commits on Mar 29, 2023

• Update docs/poppunk_iterate.rst

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  BZhao95

  and

  johnlees

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• Apply suggestions from code review

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  BZhao95

  and

  johnlees

  authored
  58bfa2e

• Update docs/poppunk_iterate.rst

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  BZhao95

  and

  johnlees

  authored
  291f25a

• Update docs/poppunk_iterate.rst

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  BZhao95

  and

  johnlees

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  27bf6af

• Update docs/poppunk_iterate.rst

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  BZhao95

  and

  johnlees

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• Update docs/poppunk_iterate.rst

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  BZhao95

  and

  johnlees

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  476b276

• Update index.rst

  BZhao95

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• Update poppunk_iterate.rst

  BZhao95

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• Delete ipp_tree_example.png

  BZhao95

  authored
  34c300a

• Delete vp_ipp_result.png

  BZhao95

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• Add files via upload

  BZhao95

  authored
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• Merge pull request #259 from BZhao95/iterative-PopPUNK-updates

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  johnlees

  authored
  d7ba534

Commits on Apr 13, 2023

• Fix for using visualise with indiv refine ref-db

  johnlees

  committed
  7b3367c

Commits on Apr 19, 2023

• Update PopPUNK/utils.py

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  johnlees

  and

  nickjcroucher

  authored
  02474e3

• Merge pull request #261 from bacpop/indiv-viz

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  johnlees

  authored
  7cb20a0

Commits on Jul 10, 2023

• Update Git Repository link

  HarryHung

  authored
  936ac48

• Merge pull request #271 from HarryHung/patch-1

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  johnlees

  authored
  e555990

• Update to new mamba action

  johnlees

  committed
  15b994f

• Improve manual installation instruction

  HarryHung

  authored
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Commits on Jul 11, 2023

• Set lower mamba version

  johnlees

  committed
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• Merge pull request #274 from HarryHung/patch-1

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  johnlees

  authored
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• Need exact version

  johnlees

  committed
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• Merge pull request #272 from bacpop/ci-fix

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  johnlees

  authored
  af0e319

Commits on Aug 14, 2023

• Allow overwrite if forced

  johnlees

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• Update error message

  johnlees

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Commits on Aug 23, 2023

• Rebuild hdbscan on CI

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• Install hdbscan from archive

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Commits on Aug 24, 2023

• Revert CI change

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Commits on Aug 25, 2023

• temporarily turn off mamba cache

  johnlees

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• Revert "temporarily turn off mamba cache"

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  johnlees

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• Need to take len of network objects

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• Renew mamba CI cache each day

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• Extract attribute first

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• Throw error earlier

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Commits on Sep 8, 2023

• Fix overwrite, correct error messages

  HarryHung

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Commits on Sep 18, 2023

• Merge pull request #282 from HarryHung/i273

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  johnlees

  authored
  54ffc03

Commits on Oct 13, 2023

• API change in mpl380 ellipses

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  johnlees

  committed
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• Merge pull request #285 from bacpop/mpl-380-fix

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  johnlees

  authored
  eaad3db

• Merge pull request #279 from bacpop/i273

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  johnlees

  authored
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• Remove deprecated system packages from readthedocs build

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  committed
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• Merge pull request #286 from bacpop/rtd-fix

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  johnlees

  authored
  6ff3bbb