Process completed with exit code 1.

Class XMLFileFilter should be declared as final.

Comment matches to-do format 'TODO:'.

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First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

Name 'max_damage' must match pattern '^[a-z][a-zA-Z0-9]*$'.

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Name 'min_damage_radius' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

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First sentence should end with a period.

switch without "default" clause.

'coord' hides a field.

Name 'G' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Missing a Javadoc comment.

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'coord' hides a field.

Class 'PatchActionTreat' looks like designed for extension (can be subclassed), but the method 'checkLocationSpace' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchActionTreat' final or making the method 'checkLocationSpace' static/final/abstract/empty, or adding allowed annotation for the method.

Missing a Javadoc comment.

'}' at column 9 should be on the same line as the next part of a multi-block statement (one that directly contains multiple blocks: if/else-if/else, do/while or try/catch/finally).

'}' at column 9 should be on the same line as the next part of a multi-block statement (one that directly contains multiple blocks: if/else-if/else, do/while or try/catch/finally).

First sentence should end with a period.

First sentence should end with a period.

Expected @param tag for 'random'.

Expected @param tag for 'series'.

Expected @param tag for 'parameters'.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

Expected @param tag for 'random'.

Expected @param tag for 'series'.

Expected @param tag for 'parameters'.

First sentence should end with a period.

Variable 'binding' must be private and have accessor methods.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

@return tag should be present and have description.

Name 'KDCAR' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Name 'KDSelf' must match pattern '^[a-z][a-zA-Z0-9]*$'.

'if' construct must use '{}'s.

Name 'CARAntigens' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

Variable 'binding' must be private and have accessor methods.

First sentence should end with a period.

Comment matches to-do format 'TODO:'.

Class 'PatchCell' looks like designed for extension (can be subclassed), but the method 'isStopped' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchCell' final or making the method 'isStopped' static/final/abstract/empty, or adding allowed annotation for the method.

Missing a Javadoc comment.

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'if' construct must use '{}'s.

'if' construct must use '{}'s.

'if' construct must use '{}'s.

Missing a Javadoc comment.

'if' construct must use '{}'s.

'if' construct must use '{}'s.

'if' construct must use '{}'s.

Comment matches to-do format 'TODO:'.

Comment matches to-do format 'TODO:'.

First sentence should end with a period.

Name 'IL2_PROD_RATE_ACTIVE' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

Name 'IL2_PROD_RATE_IL2' must match pattern '^[a-z][a-zA-Z0-9]*$'.

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Name 'IL2_SYNTHESIS_DELAY' must match pattern '^[a-z][a-zA-Z0-9]*$'.

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Name 'IL2ProdRate' must match pattern '^[a-z][a-zA-Z0-9]*$'.

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Name 'IL2Produced' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

Name 'IL2EnvTesting' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Name 'IL2Env' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

Name 'IL2Rbg' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'.

First sentence should end with a period.

Name 'IL2Rbga' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'.

First sentence should end with a period.

Name 'IL2_IL2Rbg' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'.

First sentence should end with a period.

Name 'IL2_IL2Rbga' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

Name 'IL2_BINDING_ON_RATE_MIN' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

Name 'IL2_BINDING_ON_RATE_MAX' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

Name 'IL2_BINDING_OFF_RATE' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

Name 'IL2Ticker' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

Name 'SHELL_THICKNESS' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

Name 'IL2_RECEPTORS' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

'dydt' hides a field.

Name 'kon_2' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Name 'kon_3' must match pattern '^[a-z][a-zA-Z0-9]*$'.

@return tag should be present and have description.

Class 'PatchProcessInflammation' looks like designed for extension (can be subclassed), but the method 'setInternal' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammation' final or making the method 'setInternal' static/final/abstract/empty, or adding allowed annotation for the method.

Missing a Javadoc comment.

Class 'PatchProcessInflammation' looks like designed for extension (can be subclassed), but the method 'step' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammation' final or making the method 'step' static/final/abstract/empty, or adding allowed annotation for the method.

Missing a Javadoc comment.

Missing a Javadoc comment.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

Name 'metabolicPreference_IL2' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

Name 'metabolicPreference_active' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

Name 'glucoseUptakeRate_IL2' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Name 'glucoseUptakeRate_active' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Name 'minimumMassFraction_active' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Comment matches to-do format 'TODO:'.

Name 'IL2Ticker' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Name 'IL2ReceptorsTotal' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

First sentence should end with a period.

First sentence should end with a period.

Missing a Javadoc comment.

First sentence should end with a period.

First sentence should end with a period.

Name 'GRANZ_SYNTHESIS_DELAY' must match pattern '^[a-z][a-zA-Z0-9]*$'.

First sentence should end with a period.

Class 'PatchProcessInflammationCD8' looks like designed for extension (can be subclassed), but the method 'stepProcess' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammationCD8' final or making the method 'stepProcess' static/final/abstract/empty, or adding allowed annotation for the method.

Missing a Javadoc comment.

Name 'IL2Env' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Missing a Javadoc comment.

Missing a Javadoc comment.

Missing a Javadoc comment.

Missing a Javadoc comment.

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Missing a Javadoc comment.

Comment matches to-do format 'TODO:'.

Missing a Javadoc comment.

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Missing a Javadoc comment.

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Missing a Javadoc comment.

Missing a Javadoc comment.

Missing a Javadoc comment.

Missing a Javadoc comment.

Missing a Javadoc comment.

Method create3DDrawers length is 277 lines (max allowed is 150).

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

Class 'PatchActionKillTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchActionKillTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.

'VARIABLE_DEF' should be separated from previous line.

Class 'PatchActionResetTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchActionResetTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.

Empty statement.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

Class 'PatchCellCARTCD8Test' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchCellCARTCD8Test' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.

Empty statement.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

Class 'PatchCellCARTCD4Test' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchCellCARTCD4Test' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.

Empty statement.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

Class 'PatchProcessInflammationCD8Test' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammationCD8Test' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

Class 'PatchProcessMetabolismCARTTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessMetabolismCARTTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.

Name 'metabolicPreference_IL2Field' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Name 'metabolicPreference_activeField' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Name 'glucoseUptakeRate_IL2Field' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Name 'glucoseUptakeRate_activeField' must match pattern '^[a-z][a-zA-Z0-9]*$'.

Name 'minimumMassFraction_activeField' must match pattern '^[a-z][a-zA-Z0-9]*$'.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

Class 'PatchProcessInflammationTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammationTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

'VARIABLE_DEF' should be separated from previous line.

Class 'PatchProcessInflammationCD4Test' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammationCD4Test' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.

File length is 2,371 lines (max allowed is 2,000).

';' is followed by whitespace.