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update link to shiny app
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joethorley committed Oct 4, 2018
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7 changes: 4 additions & 3 deletions DESCRIPTION
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Package: ssdtools
Version: 0.0.1.9002
Date: 2018-09-27
Version: 0.0.1.9003
Date: 2018-10-04
Title: Species Sensitivity Distributions
Description: Fits and plots species sensitivity distributions.
Description: Fits and plots species sensitivity distributions using
maximum likelihood and information-theoretic-based model averaging.
Authors@R: c(
person("Joe", "Thorley", email = "[email protected]", role = c("aut", "cre", "ctr"),
comment = c(ORCID = "0000-0002-7683-4592")),
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7 changes: 3 additions & 4 deletions README.Rmd
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[![Travis-CI Build Status](https://travis-ci.org/bcgov/ssdtools.svg?branch=master)](https://travis-ci.org/bcgov/ssdtools)
[![Coverage Status](https://img.shields.io/codecov/c/github/bcgov/ssdtools/master.svg)](https://codecov.io/github/bcgov/ssdtools?branch=master)

`ssdtools` is an R package to fit distributions to Species Sensitivity Data.
`ssdtools` is an R package to plot and fit Species Sensitivity Distributions (SSD).
It uses Maximum Likelihood and Information-Theoretic based model averaging.

## Installation

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assess alternative fits and deal with weighted and censored data see the vignette `ssdtools`.
The vignette also demonstrates how to use `ssdtools` in conjunction with `ggplot2` to produce custom plots.

A shiny webpage that was developed by [Seb Dalgaro](https://github.com/sebdalgarno) of Poisson Consulting for non-users of R is available at <https://poissonconsulting.shinyapps.io/ssdca-shiny/>.
A shiny webpage developed by [Seb Dalgaro](https://github.com/sebdalgarno) of Poisson Consulting for non-users of R is available at <https://poissonconsulting.shinyapps.io/ssdtools/>.

The data included in `ssdtools` are sourced from the Canadian environmental quality guidelines [published by the Canadian Council of Ministers of the Environment](http://ceqg-rcqe.ccme.ca/en/index.html). See the `data-raw` folder for more information.

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WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.


13 changes: 8 additions & 5 deletions README.md
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[![Coverage
Status](https://img.shields.io/codecov/c/github/bcgov/ssdtools/master.svg)](https://codecov.io/github/bcgov/ssdtools?branch=master)

`ssdtools` is an R package to fit distributions to Species Sensitivity
Data.
`ssdtools` is an R package to plot and fit Species Sensitivity
Distributions (SSD). It uses Maximum Likelihood and
Information-Theoretic based model averaging.

## Installation

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#> Loading required package: fitdistrplus
#> Loading required package: MASS
#> Loading required package: survival
#> Loading required package: npsurv
#> Loading required package: lsei
```

`ssdtools` provides a data set for several chemicals including Boron.
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#> # A tibble: 1 x 5
#> percent est se lcl ucl
#> <int> <dbl> <dbl> <dbl> <dbl>
#> 1 5 1.25 0.746 0.621 3.25
#> 1 5 1.25 0.747 0.603 3.18
```

Model-averaged predictions complete with confidence intervals can be
Expand All @@ -134,10 +137,10 @@ and censored data see the vignette `ssdtools`. The vignette also
demonstrates how to use `ssdtools` in conjunction with `ggplot2` to
produce custom plots.

A shiny webpage that was developed by [Seb
A shiny webpage developed by [Seb
Dalgaro](https://github.com/sebdalgarno) of Poisson Consulting for
non-users of R is available at
<https://poissonconsulting.shinyapps.io/ssdca-shiny/>.
<https://poissonconsulting.shinyapps.io/ssdtools/>.

The data included in `ssdtools` are sourced from the Canadian
environmental quality guidelines [published by the Canadian Council of
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2 changes: 1 addition & 1 deletion docs/CODE_OF_CONDUCT.html

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