Author: Bertrand Caron
git clone [email protected]:bertrand-caron/atb_api_public.git
cd atb_api_public
make install-user # Try running 'python setup.py install' if it fails
from atb_api import API
# Send an email to the ATB administrators to request an API token
api = API(api_token='<your_api_token_here>')
molecules = api.Molecules.search(any='ethanol', match_partial=False)
for molecule in molecules:
print(molecule.inchi)
pdb_path = '{molid}.pdb'.format(molid=molecule.molid)
molecule.download_file(fnme=pdb_path, atb_format='pdb_aa') # Get All-Atom (aa) PDB
with open(pdb_path) as fh:
print(fh.read())
A longer and more detailed example file is provided in test_atb_api.py.