molgenis-emx2 BIBBOX application

This container can be installed as BIBBOX APP or standalone.

After the docker installation follow these instructions.

Initial User/Password: admin/admin

Standalone Installation

Clone the github repository. If necessary change the ports in the environment file .env and the volume mounts in docker-compose.yml.

git clone https://github.com/bibbox/app-molgenis-emx2
cd app-molgenis-emx2
chmod -R 777 data
rm data/psql/.gitkeep
docker network create bibbox-default-network
docker-compose up -d

The main App can be opened and set up at:

http://localhost:8080

Install within BIBBOX

Visit the BIBBOX page and find the App by its name in the store. Click on the symbol and select install. Then fill the parameters below and name your App, click install again.

Docker Images used

• postgres
• molgenis/molgenis-emx2
• molgenis/ssr-catalogue

Install Environment Variables

• DB_PASSWORD = Database password, please change for production

The default values for the standalone installation are:

• DB_PASSWORD = changethispasswordinproductionenvironments

Mounted Volumes

postgres Container

• ./data/psql:/var/lib/postgresql/data
• ./data/initdb.sql:/docker-entrypoint-initdb.d/initdb.sql