remove Makefile, add pypi trusted publishing

.github/CONTRIBUTING.md

@@ -34,21 +34,15 @@ See https://pre-commit.com/ for more information.
 ## Running tests and coverage
 
 If you have followed the steps to get the development version,
-you can run tests by making use of the `Makefile` and
-[GNU Make](https://www.gnu.org/software/make/).
+you can run tests as follows.
 From the project root, call:
 
-- `make test` to run tests and coverage
+- `pytest` to run tests and coverage
 - `pre-commit run -a` to run style checks (Ruff and some additional hooks)
 
 ## Building the documentation
 
 The documentation can be built using [Sphinx](https://www.sphinx-doc.org).
-Again, assuming that you followed the steps to get the development version,
-you can use the `Makefile`.
-From the project root, call:
-
-- `make build-doc` to build the documentation and open a browser window to view it
 
 The publicly accessible documentation is built and hosted by
 [Read the Docs](https://readthedocs.org/).

.github/workflows/python_tests.yml

@@ -71,16 +71,17 @@ jobs:
     - name: Check formatting
       if: matrix.platform == 'ubuntu-latest'
       run: |
-        make check-manifest
+        check-manifest
         pre-commit run --all-files
 
     - name: Test with pytest
-      run: |
-        make test
+      # Options defined in pyproject.toml
+      run: pytest
 
     - name: Build docs
       run: |
-        make build-doc
+        make -C docs/ clean
+        make -C docs/ html
 
     - name: Upload artifacts
       if: ${{ matrix.platform == 'ubuntu-latest' && matrix.python-version == '3.12' && matrix.mne-version == 'mne-stable'}}

.github/workflows/release.yml

@@ -0,0 +1,52 @@
+# Upload a Python Package using Twine when a release is created
+
+name: release
+on:  # yamllint disable-line rule:truthy
+  release:
+    types: [published]
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+
+permissions:
+  contents: read
+
+jobs:
+  package:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.12'
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install --upgrade setuptools wheel build twine
+      - run: python -m build --sdist --wheel
+      - run: twine check --strict dist/*
+      - uses: actions/upload-artifact@v4
+        with:
+          name: dist
+          path: dist
+          include-hidden-files: true
+
+  pypi-upload:
+    needs: package
+    runs-on: ubuntu-latest
+    if: github.event_name == 'release'
+    permissions:
+      id-token: write  # for trusted publishing
+    environment:
+      name: pypi
+      url: https://pypi.org/p/pybv
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          name: dist
+          path: dist
+      - uses: pypa/gh-action-pypi-publish@release/v1
+        if: github.event_name == 'release'

MANIFEST.in

@@ -19,5 +19,4 @@ exclude .readthedocs.yaml
 exclude .git-blame-ignore-revs
 exclude .pre-commit-config.yaml
 exclude .gitignore
-exclude Makefile
 global-exclude *.pyc

pyproject.toml

@@ -64,6 +64,18 @@ Documentation = "https://pybv.readthedocs.io"
 Issues = "https://github.com/bids-standard/pybv/issues"
 Repository = "https://github.com/bids-standard/pybv"
 
+[tool.coverage.report]
+# Regexes for lines to exclude from consideration
+exclude_lines = ["if 0:", "if __name__ == .__main__.:", "pragma: no cover"]
+
+[tool.coverage.run]
+omit = ["*tests*"]
+
+[tool.pytest.ini_options]
+addopts = """. --doctest-modules --cov=pybv/ --cov-report=xml --cov-config=pyproject.toml --verbose -s"""
+filterwarnings = [
+]
+
 [tool.ruff.lint]
 ignore = ["D203", "D213"]
 select = ["A", "B006", "D", "E", "F", "I", "UP", "W"]