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Update bcftools container image to 1.20--h8b25389_0 #366

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merged 1 commit into from
Apr 16, 2024
Merged

Update bcftools container image to 1.20--h8b25389_0 #366

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4 changes: 2 additions & 2 deletions core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala
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Expand Up @@ -35,8 +35,8 @@ class BcftoolsCallArgs extends Args4jBase {
@Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
var executable: String = "bcftools"

@Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.19--h8b25389_0.")
var image: String = "quay.io/biocontainers/bcftools:1.19--h8b25389_0"
@Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.20--h8b25389_0.")
var image: String = "quay.io/biocontainers/bcftools:1.20--h8b25389_0"

@Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
var sudo: Boolean = false
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4 changes: 2 additions & 2 deletions core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala
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Expand Up @@ -36,8 +36,8 @@ class BcftoolsMpileupArgs extends Args4jBase {
@Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
var executable: String = "bcftools"

@Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.19--h8b25389_0.")
var image: String = "quay.io/biocontainers/bcftools:1.19--h8b25389_0"
@Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.20--h8b25389_0.")
var image: String = "quay.io/biocontainers/bcftools:1.20--h8b25389_0"

@Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
var sudo: Boolean = false
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4 changes: 2 additions & 2 deletions core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala
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Expand Up @@ -39,8 +39,8 @@ class BcftoolsNormArgs extends Args4jBase {
@Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
var executable: String = "bcftools"

@Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.19--h8b25389_0.")
var image: String = "quay.io/biocontainers/bcftools:1.19--h8b25389_0"
@Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.20--h8b25389_0.")
var image: String = "quay.io/biocontainers/bcftools:1.20--h8b25389_0"

@Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
var sudo: Boolean = false
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