addresses bio-tools/biotoolsSchema#189

bio-tools · May 14, 2020 · 96dc778 · 96dc778
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diff --git a/biotoolsschema_elements.rst b/biotoolsschema_elements.rst
@@ -11,6 +11,9 @@ Element groups
 --------------
 biotoolsSchema includes scientific, technical and administrative software attributes, organised for convenience into 8 logical groupings (see below).
 
+.. note::
+   As of biotoolsSchema 3.3.0, all of the element groups *other than* "Summary" and "Labels" are reflected as elements/objects in biotoolsSchema/biotoolsSchemaJ.
+
 
 .. image:: images/tool.png
 
@@ -53,7 +56,7 @@ Summary group
    "otherID->version", "Version information (typically a version number) of the software applicable to this identifier.", "xs:token (restriction)", "0 or 1"
 
 .. note::
-   See the `Curators Guide <http://biotools.readthedocs.io/en/latest/curators_guide.html#summary-group>`__.
+   See the `Curators Guide <http://biotools.readthedocs.io/en/latest/curators_guide.html#summary-group>`__.  As of biotoolsSchema 3.0.0, the Summary group does not have a corresponding element/object in biotoolsSchema/biotoolsSchemaJ (the schema was flattened).
 
 
 Function group
@@ -123,9 +126,10 @@ Labels group
    "accessibility", "Whether the software is freely available for use.", "enum (see `docs <http://biotools.readthedocs.io/en/latest/curators_guide.html#accessibility>`__)", "0 or more"
    "ELIXIRPlatform", "Name of the ELIXIR Platform that is credited.", "enum (see `docs <http://biotools.readthedocs.io/en/latest/curators_guide.html#elixir-platform>`__)", "0 or more"
    "ELIXIRNode", "Name of the ELIXIR Node that is credited.", "enum (see `docs <http://biotools.readthedocs.io/en/latest/curators_guide.html#elixir-node>`__)", "0 or more"
+   "ELIXIRCommunity", "Name of relevant ELIXIR (or other) community.", "enum (see `docs <http://biotools.readthedocs.io/en/latest/curators_guide.html#elixir-community>`__)", "0 or more"
 
 .. note::
-   See the `Curators Guide <http://biotools.readthedocs.io/en/latest/curators_guide.html#labels-group>`__.
+   See the `Curators Guide <http://biotools.readthedocs.io/en/latest/curators_guide.html#labels-group>`__. As of biotoolsSchema 3.0.0, the Labels group does not have a corresponding element/object in biotoolsSchema/biotoolsSchemaJ (the schema was flattened).
 
 Link group
 ----------

diff --git a/controlled_vocabularies.rst b/controlled_vocabularies.rst
@@ -23,7 +23,7 @@ biotoolsSchema defines 17 controlled vocabularies - as standarised enumerations
    "ID type ", "Type of tool identifier, e.g. 'rrid'."
    "ELIXIR Platform ", "Name of the ELIXIR Platform that is credited, e.g. 'Tools'"
    "ELIXIR Node ", "Name of the ELIXIR Node that is credited, e.g. 'Norway'"
-
+   "ELIXIR Community ", "Name of relevant ELIXIR (or other) community, e.g. 'Galaxy'"
 
 
 Tool type
@@ -324,3 +324,25 @@ ELIXIR Node
    "Sweden"
    "Switzerland"
    "UK"
+
+
+ELIXIR Community
+................
+*Name of relevant ELIXIR (or other) community, e.g. "Galaxy"*
+
+.. csv-table::
+   :header: "ELIXIR Node"
+   :widths: 25
+
+   "3D-BioInfo"
+   "Federated Human Data"
+   "Galaxy"
+   "Human Copy Number Variation"
+   "Intrinsically Disordered Proteins"
+   "Marine Metagenomics"
+   "Metabolomics"
+   "Microbial Biotechnology"
+   "Plant Sciences"
+   "Proteomics"
+   "Rare Diseases"
+