Update docker_2.rst #8
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Run sphinx-notes/pages@v3:
docs/index.rst#L3
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Run sphinx-notes/pages@v3:
docs/singularity.rst#L192
Lexing literal_block "# Let's create a dummy directory\nmkdir test\n\n# Let's copy the contents of the data directory in that directory\n\nsingularity exec fastqc.sif fastqc test/*fastq.gz\n\n# Check you have some HTMLs there. Remove them\nrm test/*html\n\n# Let's use shell\nsingularity shell fastqc.sif\n> cd test\n> fastqc *fastq.gz\n> exit\n\n# Check you have some HTMLs there. Remove them\nsingularity exec -B ./test:/scratch fastqc.sif fastqc /scratch/*fastq.gz\n\n# What happens here!\nsingularity exec -B ./test:/scratch fastqc.sif bash -c 'fastqc /scratch/*fastq.gz'" as "console" resulted in an error at token: "'". Retrying in relaxed mode. [misc.highlighting_failure]
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The following actions use a deprecated Node.js version and will be forced to run on node20: peaceiris/actions-gh-pages@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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