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18 Open 6 Closed
18 Open 6 Closed
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Issues list

Add .bcf.gz support enhancement New feature or request
#28 opened Sep 6, 2024 by bounlu
Add config files for more tools enhancement New feature or request
#27 opened Sep 4, 2024 by bounlu
omitting --filterNonCoding results in error bug Something isn't working
#25 opened Jul 25, 2024 by bounlu
Warning : given vaf >> vaf in config. wrong vaf threshold ?
#24 opened May 21, 2024 by dbhayal9
3
Issue in creating config.yml file for vep annotated vcf file
#22 opened Nov 17, 2023 by Raghu9721
2
--filterLowQual does not work bug Something isn't working
#21 opened Nov 2, 2023 by bounlu
3
Configuration file for Ensembl VEP enhancement New feature or request
#20 opened Oct 31, 2023 by MGCarta
1
pyEffGenomeSize throws error - single positional indexer is out-of-bounds bug Something isn't working
#18 opened Aug 3, 2023 by jpcartailler
BED file header bug Something isn't working
#16 opened Apr 13, 2023 by nservant
An error is reported while running
#15 opened Feb 10, 2023 by huilin-al
1
Minimum alternative allele depth
#10 opened Apr 6, 2022 by HMR24
1
how to use snpeff annotation with databases gnomAD，1K
#9 opened Dec 29, 2021 by user-tq
3
vcf file contains two sample
#6 opened Apr 10, 2021 by wangdepin
2
FileNotFoundError: [Errno 2] No such file or directory: 'pyeffg.intersect.bed'
#5 opened Apr 1, 2021 by deb0612
6
The format of input
#4 opened Mar 19, 2021 by deb0612
1
sys.stderr.write("Error: " + len(vcf.samples)
#3 opened Mar 15, 2021 by deb0612
3
Filtres coding / Non coding
#2 opened Jan 5, 2021 by Ephedria
4
Filtre LowQual trop stringent
#1 opened Nov 3, 2020 by tomgutman
ProTip! Adding no:label will show everything without a label.