test(#10): Add initial test

https://nfcore.slack.com/archives/C05V9FRJYMV/p1720105151208499?thread_ts=1719221876.617059&cid=C05V9FRJYMV
bioinformaticsorphanage · Jul 4, 2024 · ed37357 · ed37357
1 parent f0c002e
commit ed37357
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/justfile b/justfile
@@ -14,3 +14,10 @@ build_reference: test_data
 test_data:
     wget https://raw.githubusercontent.com/nf-core/test-datasets/nascent/testdata/SRX882903_T2.fastq.gz
     wget https://raw.githubusercontent.com/nf-core/test-datasets/nascent/reference/GRCh38_chr21.fa
+
+issue_10:
+    {{dragen}} \
+        -r /home/tigem/h.poddar/short_reads_pipelines/ref_genome/GRCh37/hash/ \
+        -1 /home/tigem/h.poddar/DRAGMAP/2A1_CGATGT_L001_R1_001.fastq.gz \
+        -2 /home/tigem/h.poddar/DRAGMAP/2A1_CGATGT_L001_R2_001.fastq.gz \
+        | samtools view -h -O BAM - > aligned.bam