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Edmund Miller
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#!/bin/bash | ||
mv DESCRIPTION DESCRIPTION.old | ||
grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION | ||
mkdir -p ~/.R | ||
echo -e "CC=$CC | ||
FC=$FC | ||
CXX=$CXX | ||
CXX98=$CXX | ||
CXX11=$CXX | ||
CXX14=$CXX" > ~/.R/Makevars | ||
$R CMD INSTALL --build . |
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{% set version = "1.36.0" %} | ||
{% set name = "groHMM" %} | ||
{% set bioc = "3.18" %} | ||
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package: | ||
name: 'bioconductor-{{ name|lower }}' | ||
version: '{{ version }}' | ||
source: | ||
url: | ||
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' | ||
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz' | ||
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' | ||
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' | ||
md5: 0b1077948ddc9895c57188ca2560bc10 | ||
build: | ||
number: 1 | ||
rpaths: | ||
- lib/R/lib/ | ||
- lib/ | ||
run_exports: '{{ pin_subpackage("bioconductor-grohmm", max_pin="x.x") }}' | ||
# Suggests: BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene | ||
requirements: | ||
host: | ||
- 'bioconductor-genomeinfodb >=1.38.0,<1.39.0' | ||
- 'bioconductor-genomicalignments >=1.38.0,<1.39.0' | ||
- 'bioconductor-genomicranges >=1.54.0,<1.55.0' | ||
- 'bioconductor-iranges >=2.36.0,<2.37.0' | ||
- 'bioconductor-rtracklayer >=1.62.0,<1.63.0' | ||
- 'bioconductor-s4vectors >=0.40.0,<0.41.0' | ||
- r-base | ||
- r-mass | ||
- libblas | ||
- liblapack | ||
run: | ||
- 'bioconductor-genomeinfodb >=1.38.0,<1.39.0' | ||
- 'bioconductor-genomicalignments >=1.38.0,<1.39.0' | ||
- 'bioconductor-genomicranges >=1.54.0,<1.55.0' | ||
- 'bioconductor-iranges >=2.36.0,<2.37.0' | ||
- 'bioconductor-rtracklayer >=1.62.0,<1.63.0' | ||
- 'bioconductor-s4vectors >=0.40.0,<0.41.0' | ||
- r-base | ||
- r-mass | ||
build: | ||
- {{ compiler('c') }} | ||
- make | ||
test: | ||
commands: | ||
- '$R -e "library(''{{ name }}'')"' | ||
about: | ||
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' | ||
license: GPL-3.0-only | ||
summary: 'GRO-seq Analysis Pipeline' | ||
description: 'A pipeline for the analysis of GRO-seq data.' | ||
license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3' | ||
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||
extra: | ||
additional-platforms: | ||
- linux-aarch64 | ||
identifiers: | ||
- biotools:{{ name|lower }} |