BioThings Docker

Build complete BioThings Studio + Hub

1. docker compose build
2. docker compose up
3. Go to http://localhost:8080/ for Biothings Studio
4. Connect to http://localhost:7080 for local Biothings Hub

Build BioThings Studio only

1. docker compose build biothings-studio-webapp
2. docker compose up biothings-studio-webapp
3. Go to http://localhost:8080/ for Biothings Studio

Build API Studio

1. docker compose build --build-arg API_NAME=mygene.info --build-arg API_VERSION=master
   Other targets:
   • myvariant.info
   • mychem.info
   • mydisease.info
   • mygeneset.info
2. docker compose up
3. Go to http://localhost:8080/ for Biothings Studio
4. Connect to http://localhost:7080 for local Biothings Hub

Connect to remote mongodb/elasticsearch hosts

1. Uncomment the extra_hosts sections in docker-compose.yml and add your hosts in the format "hostname:ip"
2. Set the MONGO_HOST and ES_HOST args in docker-compose.yml to the hostnames you added in step 1
3. Build and run the container as usual

Biothings Studio Architecture

• Biothings Studio Webapp

  • Port: 8080
  • Connects to: Biothings Hub

• Biothings Hub

  • Ports: 7022, 7080
  • Connects to: MongoDB, Elasticsearch

• MongoDB

  • Port: 27017

• Elasticsearch

  • Port: 9200

• Cerebro

  • Port: 9000
  • Connects to: Elasticsearch