Build system: Migrate to pnpm+turborepo, re-organize workspace

.eslintignore

@@ -0,0 +1 @@
+.eslintrc.js

.eslintrc.js

@@ -1,14 +1,22 @@
 module.exports = {
+  root: true,
   env: {
     browser: true,
     jest: true,
     node: true,
     commonjs: true,
     es2021: true,
   },
-  extends: ["eslint:recommended", "plugin:@typescript-eslint/recommended", "prettier"],
+  extends: [
+    "eslint:recommended",
+    "plugin:@typescript-eslint/recommended",
+    "plugin:@typescript-eslint/recommended-requiring-type-checking",
+    "prettier",
+  ],
   parser: "@typescript-eslint/parser",
   parserOptions: {
+    tsconfigRootDir: __dirname,
+    project: ["./tsconfig.json", "./packages/*/tsconfig.json"],
     ecmaVersion: 12,
   },
   plugins: ["@typescript-eslint", "prettier"],

.github/workflows/test_ws_codecov.yml

@@ -16,18 +16,24 @@ jobs:
     - uses: actions/checkout@v3
       with:
         repository: biothings/biothings_explorer
+        ref: ${{ steps.branch-name.outputs.current_branch }}
 
-    - name: Use Node.js 16.x
-      uses: actions/setup-node@v1
+    - name: Use Node.js 18.x
+      uses: actions/setup-node@v3
       with:
-        node-version: 16.x
+        node-version: 18.x
 
-    - name: npm install, generate coverage report
+    - name: Use pnpm
+      uses: pnpm/action-setup@v2
+      with:
+        version: 8
+
+    - name: pnpm install, generate coverage report
       run: |
-        npm run clone
-        npm run git checkout ${{ steps.branch-name.outputs.current_branch }}
-        npm i || true && npm i
-        npm run test-cov
+        pnpm run clone
+        pnpm run git checkout ${{ steps.branch-name.outputs.current_branch }}
+        pnpm i
+        pnpm run test-cov
 
     - name: Send coverage report to codecov for visualization
       uses: codecov/codecov-action@v3

.gitignore

@@ -47,6 +47,9 @@ typings/
 # TypeScript cache
 *.tsbuildinfo
 
+# Turbo cache
+.turbo
+
 # Optional npm cache directory
 .npm
 
@@ -121,7 +124,13 @@ built
 /.idea
 .idea/
 
-packages
+packages/*
+
+# Explicit allow packages.txt
+!packages/packages.txt
+
+# Temporary: allow web-app until new web-app integrated
+!packages/web-app
 
 # .vscode generally
 .vscode/*

.node-version

@@ -1 +1 @@
-v16
+v18

.vscode/launch.json

@@ -10,7 +10,7 @@
         "smartapi_sync"
       ],
       "cwd": "${workspaceFolder}",
-      "runtimeExecutable": "npm",
+      "runtimeExecutable": "pnpm",
       "restart": false,
       "env": {
         "DEBUG": "biomedical-id-resolver,bte*"
@@ -31,7 +31,7 @@
         "smartapi_sync"
       ],
       "cwd": "${workspaceFolder}",
-      "runtimeExecutable": "npm",
+      "runtimeExecutable": "pnpm",
       "restart": false,
       "env": {
         "DEBUG": "biomedical-id-resolver,bte*",
@@ -50,10 +50,10 @@
       "preLaunchTask": "build",
       "runtimeArgs": [
         "run",
-        "debug",
+        "debug"
       ],
       "cwd": "${workspaceFolder}",
-      "runtimeExecutable": "npm",
+      "runtimeExecutable": "pnpm",
       "restart": false,
       "env": {
         "DEBUG": "biomedical-id-resolver,bte*",
@@ -72,10 +72,10 @@
       "preLaunchTask": "build and start redis",
       "runtimeArgs": [
         "run",
-        "debug",
+        "debug"
       ],
       "cwd": "${workspaceFolder}",
-      "runtimeExecutable": "npm",
+      "runtimeExecutable": "pnpm",
       "restart": false,
       "env": {
         "REDIS_HOST": "localhost",
@@ -97,10 +97,10 @@
       "preLaunchTask": "build and start redis",
       "runtimeArgs": [
         "run",
-        "debug",
+        "debug"
       ],
       "cwd": "${workspaceFolder}",
-      "runtimeExecutable": "npm",
+      "runtimeExecutable": "pnpm",
       "restart": false,
       "env": {
         "REDIS_HOST": "localhost",
@@ -123,10 +123,10 @@
       "preLaunchTask": "build",
       "runtimeArgs": [
         "run",
-        "debug",
+        "debug"
       ],
       "cwd": "${workspaceFolder}",
-      "runtimeExecutable": "npm",
+      "runtimeExecutable": "pnpm",
       "restart": false,
       "env": {
         "REDIS_HOST": "localhost",
@@ -149,10 +149,10 @@
       "preLaunchTask": "build and start redis cluster",
       "runtimeArgs": [
         "run",
-        "debug",
+        "debug"
       ],
       "cwd": "${workspaceFolder}",
-      "runtimeExecutable": "npm",
+      "runtimeExecutable": "pnpm",
       "restart": false,
       "env": {
         "REDIS_HOST": "localhost",
@@ -175,10 +175,10 @@
       "preLaunchTask": "build",
       "runtimeArgs": [
         "run",
-        "debug",
+        "debug"
       ],
       "cwd": "${workspaceFolder}",
-      "runtimeExecutable": "npm",
+      "runtimeExecutable": "pnpm",
       "restart": false,
       "env": {
         "REDIS_HOST": "localhost",
@@ -194,6 +194,6 @@
       ],
       "stopOnEntry": true,
       "console": "integratedTerminal"
-    },
+    }
   ]
 }

.vscode/tasks.json

@@ -6,7 +6,7 @@
     {
       "label": "build",
       "type": "shell",
-      "command": "npm run compile",
+      "command": "pnpm run build",
       "presentation": {
         "echo": true,
         "reveal": "never",