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try out: use individual automats, remove use of drug approvals #52

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Nov 1, 2024
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try out: use individual automats, remove use of drug approvals #52

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36 changes: 30 additions & 6 deletions config/api_list.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -102,9 +102,36 @@ include:
name: Text Mining Targeted Association API
# TRAPI (Translator standard) APIs: Automat
# not accessible by team or api-specific endpoints
# using robokop to access all automat resources at once
- id: 4f9c8853b721ef1f14ecee6d92fc19b5
name: Automat-robokop(Trapi v1.5.0)
# Notes: We don't ingest the following:
# - Automat-robokop: seems to repeat a lot of data that is in the other APIs
- id: f82c01b15c46e024212c1a3271aaef0b
name: Automat-ctd(Trapi v1.5.0)
- id: 673b9fc76973dfa5fe3ed151fdbfc807
name: Automat-drug-central(Trapi v1.5.0)
- id: eef72049e4e01c020b7799f711e0e65b
name: Automat-gtex(Trapi v1.5.0)
- id: 759df287a21c30cd514df323be02a84b
name: Automat-gtopdb(Trapi v1.5.0)
- id: 349fed5531c094c33f10c071efe9d0de
name: Automat-gwas-catalog(Trapi v1.5.0)
- id: a5fe24f987331b58191e67598118f369
name: Automat-hetionet(Trapi v1.5.0)
- id: 8671309d2b94e413a4c1f9a9f82e4660
name: Automat-hgnc(Trapi v1.5.0)
- id: 0a1c0f46f4950b82b1aa7dad27aad10a
name: Automat-hmdb(Trapi v1.5.0)
- id: cb7a43d444cb3dcbe8e3c78d314334cf
name: Automat-human-goa(Trapi v1.5.0)
- id: c64d583402f21cc85810d33befe49c86
name: Automat-icees-kg(Trapi v1.5.0)
- id: b4023595664163e0aec5e825da150e16
name: Automat-intact(Trapi v1.5.0)
- id: 3f78d3fb8a7a577fbc7cc0a913ac3fc5
name: Automat-panther(Trapi v1.5.0)
- id: 1f057c53d42694686369f0e542f965c6
name: Automat-pharos(Trapi v1.5.0)
- id: 2aca41fc6c3dc426ec6583d42603be02
name: Automat-viral-proteome(Trapi v1.5.0)
# TRAPI (Translator standard) APIs: COHD
# not accessible by team or api-specific endpoints
# notes on COHD:
Expand All @@ -123,9 +150,6 @@ include:
- id: e51073371d7049b9643e1edbdd61bcbd
name: Clinical Trials KP - TRAPI 1.5.0
includeFlipped: true
- id: edc04feaf16c12424737988ce2e90d60
name: Drug Approvals KP - TRAPI 1.5.0
includeFlipped: true
- id: a8be4ea3fe8fa80a952ead0b3c5e4bc1
name: Microbiome KP - TRAPI 1.5.0
includeFlipped: true
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