Add mesh and mondo fields to mapping. (#181)

biothings · Dec 26, 2023 · 643995d · 643995d
1 parent 0745adb
commit 643995d
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diff --git a/src/hub/dataload/sources/clinvar/clinvar_upload.py b/src/hub/dataload/sources/clinvar/clinvar_upload.py
@@ -159,6 +159,14 @@ def get_mapping(klass):
                                             "human_phenotype_ontology": {
                                                 "type": "text",
                                                 "analyzer": "string_lowercase"
+                                            },
+                                            "mondo": {
+                                                "type": "text",
+                                                "analyzer": "string_lowercase"
+                                            },
+                                            "mesh": {
+                                                "type": "text",
+                                                "analyzer": "string_lowercase"
                                             }
                                         }
                                     },

diff --git a/static/context/context.json b/static/context/context.json
@@ -10,6 +10,8 @@
         "clinvar.rcv.conditions.identifiers.omim": "http://identifiers.org/omim/",
         "clinvar.rcv.conditions.identifiers.efo": "http://identifiers.org/efo/",
         "clinvar.rcv.conditions.identifiers.orphanet": "http://identifiers.org/orphanet/",
+        "clinvar.rcv.conditions.identifiers.mesh": "http://identifiers.org/mesh/",
+        "clinvar.rcv.conditions.identifiers.mondo": "http://identifiers.org/mondo/",
         "clinvar.gene.symbol": "http://identifiers.org/hgnc.symbol/",
         "clinvar.gene.id": "http://identifiers.org/ncbigene/",
         "dbnsfp.rsid": "http://identifiers.org/dbsnp/",