here we go

boettiger-lab · Nov 23, 2024 · 028fa6c · 028fa6c
1 parent d8e3c1b
commit 028fa6c
Showing 1 changed file with 8 additions and 0 deletions.
diff --git a/images/Dockerfile.gpu b/images/Dockerfile.gpu
@@ -34,6 +34,14 @@ RUN wget https://github.com/git-ecosystem/git-credential-manager/releases/downlo
 
 #RUN git-credential-manager configure --system
 
+RUN curl -s https://raw.githubusercontent.com/boettiger-lab/repo2docker-r/refs/heads/main/install_r.sh | bash
+RUN curl -s https://raw.githubusercontent.com/boettiger-lab/repo2docker-r/refs/heads/main/install_rstudio.sh | bash
+
+# When run as root, install.r automagically handles any necessary apt-gets
+COPY install.r install.r
+RUN Rscript install.r
+
+
 USER ${NB_USER}
 COPY spatial-env.yml spatial-env.yml
 RUN conda update -n base -c conda-forge conda && \