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@brinkmanlab

Brinkman Lab - Simon Fraser University

Bioinformatics and genomics research lab, aiming to better control infectious diseases in a sustainable way.

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  1. GenomeD3Plot GenomeD3Plot Public

    Forked from lairdm/islandplot

    SVG based genome viewer written in javascript using D3

    JavaScript 67 17

  2. islandpath islandpath Public

    IslandPath standalone software

    Perl 31 4

  3. psortb-docker psortb-docker Public

    Forked from lairdm/psortb-docker

    Docker build environment for PSORTb

    Dockerfile 4 1

  4. IslandCompare IslandCompare Public

    Pipeline for detecting and annotating genomic islands and relationships between the respective genomes

    Vue 4 2

  5. psortb_commandline_docker psortb_commandline_docker Public

    PSORTb command-line docker - Dockerfile and "docker run" wrapper

    Perl 4 5

  6. BioPython-Convert BioPython-Convert Public

    Tool to interconvert between various bioinformatics formats that BioPython supports

    Roff 4 1

Repositories

Showing 10 of 58 repositories
  • Duotang_Archive Public

    Archive repo for CoVaRR-Net's Duotang SARS-CoV-2 Notebooks

    brinkmanlab/Duotang_Archive’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Aug 16, 2024
  • BioPython-Convert Public

    Tool to interconvert between various bioinformatics formats that BioPython supports

    brinkmanlab/BioPython-Convert’s past year of commit activity
    Roff 4 1 2 1 Updated Jul 4, 2024
  • islandviewer-ui Public Forked from lairdm/islandviewer-ui

    Web UI for Islandviewer

    brinkmanlab/islandviewer-ui’s past year of commit activity
    HTML 1 GPL-3.0 3 0 0 Updated Mar 8, 2024
  • islandpath Public

    IslandPath standalone software

    brinkmanlab/islandpath’s past year of commit activity
    Perl 31 GPL-3.0 4 7 1 Updated Nov 7, 2023
  • IslandCompare Public

    Pipeline for detecting and annotating genomic islands and relationships between the respective genomes

    brinkmanlab/IslandCompare’s past year of commit activity
    Vue 4 2 39 (2 issues need help) 20 Updated Aug 21, 2023
  • islandviewer Public Forked from lairdm/islandviewer

    Perl library to run the IslandViewer backend

    brinkmanlab/islandviewer’s past year of commit activity
    Perl 2 GPL-3.0 2 0 1 Updated Aug 17, 2023
  • galaxy-tools Public

    Central repo for all brinkman maintained Galaxy Tools

    brinkmanlab/galaxy-tools’s past year of commit activity
    Python 2 2 10 1 Updated Jun 21, 2023
  • curated_GIs Public

    Curated database of labelled Genomic Islands found in publications

    brinkmanlab/curated_GIs’s past year of commit activity
    HTML 1 0 4 0 Updated Apr 28, 2023
  • globecorr Public
    brinkmanlab/globecorr’s past year of commit activity
    Vue 0 1 5 0 Updated Apr 25, 2023
  • psortb_commandline_docker Public

    PSORTb command-line docker - Dockerfile and "docker run" wrapper

    brinkmanlab/psortb_commandline_docker’s past year of commit activity
    Perl 4 5 4 0 Updated Feb 3, 2023