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afermg committed Nov 19, 2024
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Expand Up @@ -4,37 +4,7 @@ What is the purpose of this website? To provide up-to-date info on everything JU

## Choose Your Own Path

1. **Just exploring the data?**

- Use a web interface; no programming required:
* [JUMP-CP Data Explorer](https://phenaid.ardigen.com/jumpcpexplorer/) by Ardigen,
* [JUMP-CP Data Portal](https://www.springscience.com/jump-cp) by Spring Discovery,
* [JUMPer tools](https://github.com/broadinstitute/monorepo/tree/main/libs/jump_rr#quick-data-access) by Carpenter–Singh Lab (Muñoz et al.)
* Morpheus by Broad Institute

You can look up images for a sample, distinguishing features, most-similar genes or compounds, and more\!



2. **Want to fetch and analyze data?**

- Follow our [how-to guides](http://howto/) for common analyses



3. **Looking to build tools?**

- Use our Python libraries [cpgdata](https://github.com/broadinstitute/cpg/tree/main/cpgdata), [jump-portrait](https://github.com/broadinstitute/monorepo/tree/main/libs/jump_portrait), [jump-babel](https://github.com/broadinstitute/monorepo/tree/main/libs/jump_babel) and other libraries in the [monorepo](https://github.com/broadinstitute/monorepo/tree/main)
- Access the [metadata schema](https://github.com/jump-cellpainting/datasets/tree/main/metadata)

## Need help or more information?

- Read the papers creating the datasets for experimental and analysis details:
- [CPJUMP1](https://www.nature.com/articles/s41592-024-02241-6)
- JUMP data prod biorxiv
- Morphmap biorxiv
- Raise an issue or ask a question on [Github](https://github.com/jump-cellpainting/datasets/issues)
- Subscribe to updates at [jump-cellpainting.broadinstitute.org/more-info](https://jump-cellpainting.broadinstitute.org/more-info)
[Here](https://github.com/broadinstitute/monorepo/blob/main/libs/jump_rr/README.md#Quick%20data%20access) you can find the up-to-date web tools to explore JUMP from your browser. These are very useful for querying perturbations without needing experience in data analysis or programming. They are also very convenient for a one-off query of the dataset.


### How can I access the How-To guides in a live coding environment?
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