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Removed metadata that is now contained in the pyproject.toml. setup.py now only serves to house the custom build steps related to building Neuron's mod files.
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@@ -1,39 +1,18 @@ | ||
#! /usr/bin/env python | ||
import platform | ||
import os.path as op | ||
import os | ||
import subprocess | ||
import shutil | ||
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from setuptools import setup, find_packages, Command | ||
from setuptools import setup, Command | ||
from setuptools.command.build_py import build_py | ||
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descr = """Code for biophysical simulation of a cortical column using Neuron""" | ||
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DISTNAME = 'hnn-core' | ||
DESCRIPTION = descr | ||
MAINTAINER = 'Mainak Jas' | ||
MAINTAINER_EMAIL = '[email protected]' | ||
URL = '' | ||
LICENSE = 'BSD (3-clause)' | ||
DOWNLOAD_URL = 'http://github.com/jonescompneurolab/hnn-core' | ||
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# get the version | ||
version = None | ||
with open(os.path.join('hnn_core', '__init__.py'), 'r') as fid: | ||
for line in (line.strip() for line in fid): | ||
if line.startswith('__version__'): | ||
version = line.split('=')[1].strip().strip('\'') | ||
break | ||
if version is None: | ||
raise RuntimeError('Could not determine version') | ||
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# test install with: | ||
# test the build of wheel and sdist: | ||
# First remove residual mod files | ||
# $ rm -rf hnn_core/mod/x86_64/ | ||
# $ python setup.py clean --all install | ||
# | ||
# to make sure there are no residual mod files | ||
# or for Apple silicon | ||
# $ rm -rf hnn_core/mod/mod64/ | ||
# $ python -m build | ||
# | ||
# also see following link to understand why build_py must be overridden: | ||
# https://stackoverflow.com/questions/51243633/python-setuptools-setup-py-install-does-not-automatically-call-build | ||
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@@ -72,59 +51,5 @@ def run(self): | |
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build_py.run(self) | ||
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setup(cmdclass={'build_py': build_py_mod, 'build_mod': BuildMod}) | ||
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if __name__ == "__main__": | ||
extras = { | ||
'opt': ['scikit-learn'], | ||
'parallel': ['joblib', 'psutil'], | ||
'test': ['flake8', 'pytest', 'pytest-cov', ], | ||
'docs': ['mne', 'nibabel', 'pooch', 'tdqm', | ||
'sphinx', 'sphinx-gallery', | ||
'sphinx_bootstrap_theme', 'sphinx-copybutton', | ||
'pillow', 'numpydoc', | ||
], | ||
'gui': ['ipywidgets>=8.0.0', 'ipykernel', 'ipympl', 'voila', ], | ||
} | ||
extras['dev'] = (extras['opt'] + extras['parallel'] + extras['test'] + | ||
extras['docs'] + extras['gui'] | ||
) | ||
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setup(name=DISTNAME, | ||
maintainer=MAINTAINER, | ||
maintainer_email=MAINTAINER_EMAIL, | ||
description=DESCRIPTION, | ||
license=LICENSE, | ||
url=URL, | ||
version=version, | ||
download_url=DOWNLOAD_URL, | ||
long_description=open('README.rst').read(), | ||
classifiers=[ | ||
'Intended Audience :: Science/Research', | ||
'Intended Audience :: Developers', | ||
'License :: OSI Approved', | ||
'Programming Language :: Python', | ||
'Topic :: Software Development', | ||
'Topic :: Scientific/Engineering', | ||
'Operating System :: Microsoft :: Windows', | ||
'Operating System :: POSIX', | ||
'Operating System :: Unix', | ||
'Operating System :: MacOS', | ||
], | ||
platforms='any', | ||
install_requires=[ | ||
'numpy >=1.14', | ||
'NEURON >=7.7; platform_system != "Windows"', | ||
'matplotlib>=3.5.3', | ||
'scipy', | ||
'h5io' | ||
], | ||
extras_require=extras, | ||
python_requires='>=3.8', | ||
packages=find_packages(), | ||
package_data={'hnn_core': [ | ||
'param/*.json', | ||
'gui/*.ipynb']}, | ||
cmdclass={'build_py': build_py_mod, 'build_mod': BuildMod}, | ||
entry_points={'console_scripts': ['hnn-gui=hnn_core.gui.gui:launch']} | ||
) |