`fastq-join`

This is the work of:

Erik Aronesty (2013). TOBioiJ : "Comparison of Sequencing Utility Programs", DOI:10.2174/1875036201307010001

Changes

The Versioning here is awful. I've bumped the version with no major changes or bug fixes to the original algorithm.

git clone https://github.com/brwnj/fastq-join
cd fastq-join
make

Some tests are failing when building on OS X versus Redhat 6.6. OS X gives "nan" while Redhat gives "-nan".

fastq-join -p 2 -m 200 test_R1.fastq test_R2.fastq -o test_%.fastq

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
recipe		recipe
tests		tests
Makefile		Makefile
README.md		README.md
fastq-join.cpp		fastq-join.cpp
fastq-lib.cpp		fastq-lib.cpp
fastq-lib.h		fastq-lib.h