On Study View handle larger number of resource files

packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal-docs.json

@@ -2831,6 +2831,103 @@
         "operationId": "getAllStudyResourceDataInStudyUsingGET"
       }
     },
+    "/api/studies/{studyId}/resource-data-all": {
+      "get": {
+        "produces": [
+          "application/json"
+        ],
+        "parameters": [
+          {
+            "description": "Study ID e.g. acc_tcga",
+            "in": "path",
+            "name": "studyId",
+            "required": true,
+            "type": "string"
+          },
+          {
+            "description": "Resource ID",
+            "in": "query",
+            "name": "resourceId",
+            "required": false,
+            "type": "string"
+          },
+          {
+            "default": "SUMMARY",
+            "description": "Level of detail of the response",
+            "enum": [
+              "ID",
+              "SUMMARY",
+              "DETAILED",
+              "META"
+            ],
+            "in": "query",
+            "name": "projection",
+            "required": false,
+            "type": "string"
+          },
+          {
+            "default": 10000000,
+            "description": "Page size of the result list",
+            "format": "int32",
+            "in": "query",
+            "maximum": 10000000,
+            "minimum": 1,
+            "name": "pageSize",
+            "required": false,
+            "type": "integer"
+          },
+          {
+            "default": 0,
+            "description": "Page number of the result list",
+            "format": "int32",
+            "in": "query",
+            "minimum": 0,
+            "name": "pageNumber",
+            "required": false,
+            "type": "integer"
+          },
+          {
+            "description": "Name of the property that the result list is sorted by",
+            "enum": [
+              "ResourceId",
+              "url"
+            ],
+            "in": "query",
+            "name": "sortBy",
+            "required": false,
+            "type": "string"
+          },
+          {
+            "default": "ASC",
+            "description": "Direction of the sort",
+            "enum": [
+              "ASC",
+              "DESC"
+            ],
+            "in": "query",
+            "name": "direction",
+            "required": false,
+            "type": "string"
+          }
+        ],
+        "responses": {
+          "200": {
+            "description": "OK",
+            "schema": {
+              "items": {
+                "$ref": "#/definitions/ResourceData"
+              },
+              "type": "array"
+            }
+          }
+        },
+        "tags": [
+          "Resource Data"
+        ],
+        "description": "Get all resource data for for all patients and all samples within a study",
+        "operationId": "getAllStudyResourceDataInStudyPatientSampleUsingGET"
+      }
+    },
     "/api/studies/{studyId}/resource-definitions": {
       "get": {
         "produces": [

packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal.ts

@@ -6746,6 +6746,159 @@ export default class CBioPortalAPIInternal {
                 return response.body;
             });
         };
+    getAllStudyResourceDataInStudyPatientSampleUsingGETURL(parameters: {
+        'studyId': string,
+        'resourceId' ? : string,
+        'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+        'pageSize' ? : number,
+        'pageNumber' ? : number,
+        'sortBy' ? : "ResourceId" | "url",
+        'direction' ? : "ASC" | "DESC",
+        $queryParameters ? : any
+    }): string {
+        let queryParameters: any = {};
+        let path = '/api/studies/{studyId}/resource-data-all';
+
+        path = path.replace('{studyId}', parameters['studyId'] + '');
+        if (parameters['resourceId'] !== undefined) {
+            queryParameters['resourceId'] = parameters['resourceId'];
+        }
+
+        if (parameters['projection'] !== undefined) {
+            queryParameters['projection'] = parameters['projection'];
+        }
+
+        if (parameters['pageSize'] !== undefined) {
+            queryParameters['pageSize'] = parameters['pageSize'];
+        }
+
+        if (parameters['pageNumber'] !== undefined) {
+            queryParameters['pageNumber'] = parameters['pageNumber'];
+        }
+
+        if (parameters['sortBy'] !== undefined) {
+            queryParameters['sortBy'] = parameters['sortBy'];
+        }
+
+        if (parameters['direction'] !== undefined) {
+            queryParameters['direction'] = parameters['direction'];
+        }
+
+        if (parameters.$queryParameters) {
+            Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                var parameter = parameters.$queryParameters[parameterName];
+                queryParameters[parameterName] = parameter;
+            });
+        }
+        let keys = Object.keys(queryParameters);
+        return this.domain + path + (keys.length > 0 ? '?' + (keys.map(key => key + '=' + encodeURIComponent(queryParameters[key])).join('&')) : '');
+    };
+
+    /**
+     * Get all resource data for for all patients and all samples within a study
+     * @method
+     * @name CBioPortalAPIInternal#getAllStudyResourceDataInStudyPatientSampleUsingGET
+     * @param {string} studyId - Study ID e.g. acc_tcga
+     * @param {string} resourceId - Resource ID
+     * @param {string} projection - Level of detail of the response
+     * @param {integer} pageSize - Page size of the result list
+     * @param {integer} pageNumber - Page number of the result list
+     * @param {string} sortBy - Name of the property that the result list is sorted by
+     * @param {string} direction - Direction of the sort
+     */
+    getAllStudyResourceDataInStudyPatientSampleUsingGETWithHttpInfo(parameters: {
+        'studyId': string,
+        'resourceId' ? : string,
+        'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+        'pageSize' ? : number,
+        'pageNumber' ? : number,
+        'sortBy' ? : "ResourceId" | "url",
+        'direction' ? : "ASC" | "DESC",
+        $queryParameters ? : any,
+        $domain ? : string
+    }): Promise < request.Response > {
+        const domain = parameters.$domain ? parameters.$domain : this.domain;
+        const errorHandlers = this.errorHandlers;
+        const request = this.request;
+        let path = '/api/studies/{studyId}/resource-data-all';
+        let body: any;
+        let queryParameters: any = {};
+        let headers: any = {};
+        let form: any = {};
+        return new Promise(function(resolve, reject) {
+            headers['Accept'] = 'application/json';
+
+            path = path.replace('{studyId}', parameters['studyId'] + '');
+
+            if (parameters['studyId'] === undefined) {
+                reject(new Error('Missing required  parameter: studyId'));
+                return;
+            }
+
+            if (parameters['resourceId'] !== undefined) {
+                queryParameters['resourceId'] = parameters['resourceId'];
+            }
+
+            if (parameters['projection'] !== undefined) {
+                queryParameters['projection'] = parameters['projection'];
+            }
+
+            if (parameters['pageSize'] !== undefined) {
+                queryParameters['pageSize'] = parameters['pageSize'];
+            }
+
+            if (parameters['pageNumber'] !== undefined) {
+                queryParameters['pageNumber'] = parameters['pageNumber'];
+            }
+
+            if (parameters['sortBy'] !== undefined) {
+                queryParameters['sortBy'] = parameters['sortBy'];
+            }
+
+            if (parameters['direction'] !== undefined) {
+                queryParameters['direction'] = parameters['direction'];
+            }
+
+            if (parameters.$queryParameters) {
+                Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                    var parameter = parameters.$queryParameters[parameterName];
+                    queryParameters[parameterName] = parameter;
+                });
+            }
+
+            request('GET', domain + path, body, headers, queryParameters, form, reject, resolve, errorHandlers);
+
+        });
+    };
+
+    /**
+     * Get all resource data for for all patients and all samples within a study
+     * @method
+     * @name CBioPortalAPIInternal#getAllStudyResourceDataInStudyPatientSampleUsingGET
+     * @param {string} studyId - Study ID e.g. acc_tcga
+     * @param {string} resourceId - Resource ID
+     * @param {string} projection - Level of detail of the response
+     * @param {integer} pageSize - Page size of the result list
+     * @param {integer} pageNumber - Page number of the result list
+     * @param {string} sortBy - Name of the property that the result list is sorted by
+     * @param {string} direction - Direction of the sort
+     */
+    getAllStudyResourceDataInStudyPatientSampleUsingGET(parameters: {
+            'studyId': string,
+            'resourceId' ? : string,
+            'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+            'pageSize' ? : number,
+            'pageNumber' ? : number,
+            'sortBy' ? : "ResourceId" | "url",
+            'direction' ? : "ASC" | "DESC",
+            $queryParameters ? : any,
+            $domain ? : string
+        }): Promise < Array < ResourceData >
+        > {
+            return this.getAllStudyResourceDataInStudyPatientSampleUsingGETWithHttpInfo(parameters).then(function(response: request.Response) {
+                return response.body;
+            });
+        };
     getAllResourceDefinitionsInStudyUsingGETURL(parameters: {
         'studyId': string,
         'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",

packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI-docs.json

@@ -1606,6 +1606,15 @@
         },
         "ncitCode": {
           "type": "string"
+        },
+        "synonyms": {
+          "type": "array",
+          "items": {
+            "type": "string"
+          }
+        },
+        "uuid": {
+          "type": "string"
         }
       }
     },

packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI.ts

@@ -192,6 +192,10 @@ export type Drug = {
 
         'ncitCode': string
 
+        'synonyms': Array < string >
+
+        'uuid': string
+
 };
 export type EnsemblFilter = {
     'geneIds': Array < string >