Code

Ensemble#19

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davek44 wants to merge 72 commits intomastercalico/basenji:masterfrom ensemblecalico/basenji:ensembleCopy head branch name to clipboard

+3,338-505

Commits

Commits on Jul 31, 2018

• failing with map_fn

  davek44

  committed
  26891d5

• cond refuses transform_fn

  davek44

  committed
  41444af

• another failed attempt

  davek44

  committed
  0bb926d

• moving cond downstream but map_fn still fails

  davek44

  committed
  32a529c

• separate train and eval loss

  davek44

  committed
  bf42d4e

• needs preds_length

  davek44

  committed
  76f3340

• augmentation methods

  davek44

  committed
  2e57fd6

• h5 in-graph augmentation

  davek44

  committed
  2797ccb

• tuning

  davek44

  committed
  b66bc9c

• tran epoch bug

  davek44

  committed
  257544b

• h5 ensembling in-graph

  davek44

  committed
  a013f9e

• test feed dict

  davek44

  committed
  18386bc

• update placeholder

  davek44

  committed
  9686338

• 0 shift defaults

  davek44

  committed
  cd9a875

• testing

  davek44

  committed
  558f53f

• target labels

  davek44

  committed
  03fad02

• float64 loss mean

  davek44

  committed
  bcef7ab

• default shift 0

  davek44

  committed
  19e110b

• no data open

  davek44

  committed
  23d2f70

• create new data_ops dict

  davek44

  committed
  b4e5df5

• average predictions, not representations

  davek44

  committed
  aaa46fa

• rename build

  davek44

  committed
  cd77912

• predict in-graph ensembling

  davek44

  committed
  df29615

• penultimate draft

  davek44

  committed
  269a2ed

• missing comma

  davek44

  committed
  a16a31b

• penultimate loss fix

  davek44

  committed
  2e5af1c

• hidden and map

  davek44

  committed
  f376d01

• align predict_h5 with predict_h5_manual

  davek44

  committed
  29dd294

Commits on Aug 10, 2018

• sqrt soft clip

  davek44

  committed
  0f0f34a

Commits on Aug 11, 2018

• debugging TFR

  davek44

  committed
  672b434

Commits on Aug 12, 2018

• nan baseline

  davek44

  committed
  e0a0408

• seqs_per_tfr

  davek44

  committed
  777b0e5

Commits on Aug 13, 2018

• shuffle bug

  davek44

  committed
  ab0ed1d

• failing with map_fn

  davek44

  committed
  c86098f

• cond refuses transform_fn

  davek44

  committed
  391abd4

• another failed attempt

  davek44

  committed
  77bda7f

• moving cond downstream but map_fn still fails

  davek44

  committed
  57ee2c3

• separate train and eval loss

  davek44

  committed
  d917be8

• needs preds_length

  davek44

  committed
  17fd1ce

• augmentation methods

  davek44

  committed
  96c01d6

• h5 in-graph augmentation

  davek44

  committed
  1770abd

• tuning

  davek44

  committed
  65c7bb5

• tran epoch bug

  davek44

  committed
  68f5f65

• h5 ensembling in-graph

  davek44

  committed
  702ec1e

• test feed dict

  davek44

  committed
  40a960e

• update placeholder

  davek44

  committed
  e80c4fb

• 0 shift defaults

  davek44

  committed
  dfa8224

• testing

  davek44

  committed
  c253cb9

• target labels

  davek44

  committed
  f68c6ac

• float64 loss mean

  davek44

  committed
  b344161

• default shift 0

  davek44

  committed
  74b12c3

• no data open

  davek44

  committed
  99fdf38

• create new data_ops dict

  davek44

  committed
  53b9a53

• average predictions, not representations

  davek44

  committed
  6799d25

• rename build

  davek44

  committed
  2769f82

• predict in-graph ensembling

  davek44

  committed
  44b099d

• penultimate draft

  davek44

  committed
  f6c4379

• missing comma

  davek44

  committed
  ad01d86

• penultimate loss fix

  davek44

  committed
  0ec3447

• hidden and map

  davek44

  committed
  3f35246

• align predict_h5 with predict_h5_manual

  davek44

  committed
  2f84d67

• sad tf.data

  davek44

  committed
  7ff7ed2

• reverse_complement bug fix

  davek44

  committed
  6b5e502

• optimizing

  davek44

  committed
  51a3671

• sadq multi

  davek44

  committed
  5e19e7e

• dynamic batch size

  davek44

  committed
  1d6bb21

• full batches unnecessary

  davek44

  committed
  74dec8b

• weighted average losses

  davek44

  committed
  8264f08

Commits on Aug 15, 2018

• sad optimizations

  davek44

  committed
  eb5c224

• increase shuffle buffer

  davek44

  committed
  33fa21e

Commits on Aug 18, 2018

• typo and descriptions

  davek44

  committed
  a4c05a6

Commits on Aug 20, 2018

• conflicts

  davek44

  committed
  415a8ca