Skip to content

carleton-spacehogs/tree-reconciliation

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

354 Commits
KL-Divergence
KL-Divergence
 
 
R-plots
R-plots
 
 
cir1_ecceTERA_analysis
cir1_ecceTERA_analysis
 
 
cir1_ecceTERA_output
cir1_ecceTERA_output
 
 
events_locations
events_locations
 
 
gene_alignments
gene_alignments
 
 
habitat-prediction
habitat-prediction
 
 
iqtree_gene_trees
iqtree_gene_trees
 
 
ln3_ecceTERA_analysis
ln3_ecceTERA_analysis
 
 
ln3_ecceTERA_output
ln3_ecceTERA_output
 
 
phylum-level-reconstruction
phylum-level-reconstruction
 
 
scripts
scripts
 
 
specific_substrates
specific_substrates
 
 
ugam1_ecceTERA_analysis
ugam1_ecceTERA_analysis
 
 
ugam1_ecceTERA_output
ugam1_ecceTERA_output
 
 
.DS_Store
.DS_Store
 
 
.gitignore
.gitignore
 
 
COG_align.csv
COG_align.csv
 
 
COG_reconciliation_summary_cir1.csv
COG_reconciliation_summary_cir1.csv
 
 
COG_reconciliation_summary_ln3.csv
COG_reconciliation_summary_ln3.csv
 
 
COG_reconciliation_summary_ugam1.csv
COG_reconciliation_summary_ugam1.csv
 
 
README.md
README.md
 
 
Rplots.pdf
Rplots.pdf
 
 
allGeneBirthDate-baross.its.carleton.edu.txt
allGeneBirthDate-baross.its.carleton.edu.txt
 
 
check-summary.sh
check-summary.sh
 
 
cir1_ChenParamsEarth_sample.chronogram
cir1_ChenParamsEarth_sample.chronogram
 
 
deepNOG_COG_count.txt
deepNOG_COG_count.txt
 
 
diamond_COG_count.txt
diamond_COG_count.txt
 
 
dispatch-COGs.sh
dispatch-COGs.sh
 
 
eceeTERA-exit-code.tmp
eceeTERA-exit-code.tmp
 
 
environment_setup.log
environment_setup.log
 
 
ln3_ChenParamsEarth_sample.chronogram
ln3_ChenParamsEarth_sample.chronogram
 
 
muscle5.1
muscle5.1
 
 
output.txt
output.txt
 
 
reconcile.sh
reconcile.sh
 
 
reconcile_corrected.sh
reconcile_corrected.sh
 
 
reconcile_tree_software_design.pptx
reconcile_tree_software_design.pptx
 
 
reconcile_updated_trimming.sh
reconcile_updated_trimming.sh
 
 
reconciliationsFile_canonical_random.recPhyloXML
reconciliationsFile_canonical_random.recPhyloXML
 
 
run_dispatch_screens.sh
run_dispatch_screens.sh
 
 
speciationEvents43GYA.csv
speciationEvents43GYA.csv
 
 
speciationEvents44GYA.csv
speciationEvents44GYA.csv
 
 
tmp_cir1
tmp_cir1
 
 
tmp_cugam1
tmp_cugam1
 
 
ugam1_ChenParamsEarth_sample.chronogram
ugam1_ChenParamsEarth_sample.chronogram
 
 
unit-test.sh
unit-test.sh
 
 
~.bashrc
~.bashrc
 
 

Repository files navigation

tree-reconciliation

About

Reconciling gene and species tree for all COG categories

Resources

Readme
Activity
Custom properties

Stars

1 star

Watchers

0 watching

Forks

0 forks
Report repository

Releases

No releases published

Packages

No packages published

Contributors 2

  •  
  •  

Languages