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Update README.md
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tigloo123 authored Aug 22, 2023
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8 changes: 5 additions & 3 deletions README.md
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Expand Up @@ -100,7 +100,7 @@ Here is the semantics of the columns:
has been done (e.g. "endo", "endocellular", "cyto", etc)
- <code>original_name</code> contains the column names that are provided in the quantification files

Example:
_Example_:

| name_to_plot | condition | timepoint | timenum | compartment | original_name |
|--------------|-----------|-----------|---------|-------------|---------------|
Expand Down Expand Up @@ -227,7 +227,7 @@ Formatting example of differentially expressed genes files
These files contain the user-provided metabolites and genes for each pathway. It is allowed for a metabolite or gene to appear in several pathways.
Identifiers must match with those appearing in the quantification files in the <code>raw</code> folder. Gene names must match with those appearing in the DEGs file

Examples:
_Example_ for metabolites per pathway:

| GLYCOLYSIS | PENTOSE_PHOSPHATE | ... |
|------------|-------------------|-----|
Expand All @@ -236,7 +236,9 @@ Examples:
| PEP | Glucose_6P | ... |
| ... | ... | ... |



_Example_ for genes per pathway:

| GLYCOLYSIS | PENTOSE_PHOSPHATE | ... |
|------------|-------------------|-----|
| GPI | RPIA | ... |
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