Release 0.0.7

What's Changed

• Constrain jsonargparse version by @ordabayevy in #194

Full Changelog: 0.0.6...0.0.7

Release 0.0.5

What's Changed

• Fix highly variable genes cutoffs by @fedorgrab in #124
• Add perturbation functionality to geneformer's .predict() method by @sjfleming in #98
• Fix concatenating anndata files by @ordabayevy in #127
• Update README.rst by @ordabayevy in #128
• Update CellariumAnnDataDataModule and CellariumModule by @ordabayevy in #125
• Use ruff formatter instead of black formatter by @ordabayevy in #136
• Add shifted data algorithm for variance computation to OnePassMeanVarStd by @ordabayevy in #154
• Fix Geneformer docstring formatting by @ordabayevy in #165
• Fix GatherLayer backward by @bricewang in #170
• Add GatherLayer test by @ordabayevy in #172
• Add short description and code organization section to README.rst by @ordabayevy in #164
• Improve error messages by @ordabayevy in #173
• Fix README by @ordabayevy in #174
• Add example configs by @ordabayevy in #166
• NegativeBinomial parametrized by mu and theta by @ordabayevy in #171
• Fix GatherLayer.backward and make the test more stringent by @ordabayevy in #184
• Make a docs page out of cli_workflow example by @ordabayevy in #182
• Add val_dataloader method by @ordabayevy in #185
• Add validation_step by @ordabayevy in #188

Full Changelog: 0.0.4...0.0.5

Release 0.0.3

What's Changed

• Move examples to cellarium.ml.cli by @ordabayevy in #89
• Override load_from_checkpoint classmethod of TrainingPlan by @ordabayevy in #91
• Fix __len__ of IterableDistributedAnnDataCollectionDataset by @ordabayevy in #93
• Specify IterableDataset return dict through convert argument by @ordabayevy in #83
• Refactor transforms by @ordabayevy in #90
• Refactor submodules by @ordabayevy in #96
• AnnDataField by @ordabayevy in #101
• LogisticRegression by @ordabayevy in #100
• crick by @ordabayevy in #104

Full Changelog: 0.0.2...0.0.3

Release 0.0.2

Update docs (#82)

* initial commit

* wip

* dadc wip

* indentation

* fix

* lint

* address comments & autodoc typehints and defaults

* fix test_examples

* fix test_read_h5ad