Adding new/updated cellcanvas_experimental-server_0.0.11

cellcanvas · Oct 22, 2024 · 401db5c · 401db5c
1 parent 58dcd4e
commit 401db5c
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Showing 4 changed files with 11 additions and 7 deletions.
diff --git a/album_catalog_index.db b/album_catalog_index.db
diff --git a/solutions/cellcanvas/experimental-server/CHANGELOG.md b/solutions/cellcanvas/experimental-server/CHANGELOG.md
@@ -28,6 +28,9 @@ Update copick usage
 ## [0.0.2] - 2024-10-21
 Update solution versions and switch to torch features
 
+## [0.0.11] - 2024-10-22
+Upgrade to newer torch features
+
 ## [0.0.10] - 2024-10-22
 Use immediate write mode for prediction
 

diff --git a/solutions/cellcanvas/experimental-server/solution.py b/solutions/cellcanvas/experimental-server/solution.py
@@ -153,7 +153,7 @@ def run_album_solution_thread(catalog: str, group: str, name: str, version: str,
     # Install necessary album solutions
     def install_album_solutions():
         solutions_to_install = [
-            "cellcanvas:copick:generate-torch-basic-features:0.0.3",
+            "cellcanvas:copick:generate-torch-basic-features:0.0.4",
             "cellcanvas:copick:train-model-xgboost-copick:0.0.2",
             "cellcanvas:cellcanvas:segment-tomogram-xgboost:0.0.7"
         ]
@@ -173,7 +173,7 @@ def install_album_solutions():
     @app.post("/generate-features")
     async def generate_features_endpoint(solution_args: GenerateFeaturesArgs):
         logger.info(f"Received generate_features request: {solution_args}")
-        catalog, group, name, version = "cellcanvas", "copick", "generate-torch-basic-features", "0.0.3"
+        catalog, group, name, version = "cellcanvas", "copick", "generate-torch-basic-features", "0.0.4"
         check_solution_allowed(catalog, group, name)
 
         args_list = [
@@ -186,7 +186,8 @@ async def generate_features_endpoint(solution_args: GenerateFeaturesArgs):
             "--edges", str(solution_args.edges),
             "--texture", str(solution_args.texture),
             "--sigma_min", str(solution_args.sigma_min),
-            "--sigma_max", str(solution_args.sigma_max)
+            "--sigma_max", str(solution_args.sigma_max),
+            "--num_sigma", str(8)
         ]
 
         logger.info(f"Executing generate_features with args: {args_list}")
@@ -292,7 +293,7 @@ async def get_status():
 setup(
     group="cellcanvas",
     name="experimental-server",
-    version="0.0.10",
+    version="0.0.11",
     title="FastAPI CellCanvas Server",
     description="Backend for CellCanvas with Copick Config Support.",
     solution_creators=["Kyle Harrington"],

diff --git a/solutions/cellcanvas/experimental-server/solution.yml b/solutions/cellcanvas/experimental-server/solution.yml
@@ -10,7 +10,7 @@ args:
   name: models_json_path
   required: false
   type: string
-changelog: Use immediate write mode for prediction
+changelog: Upgrade to newer torch features
 description: Backend for CellCanvas with Copick Config Support.
 group: cellcanvas
 license: MIT
@@ -22,6 +22,6 @@ tags:
 - album
 - server
 - copick
-timestamp: '2024-10-22T10:34:46.118155'
+timestamp: '2024-10-22T11:06:34.503994'
 title: FastAPI CellCanvas Server
-version: 0.0.10
+version: 0.0.11