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63 Open 126 Closed
63 Open 126 Closed
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Issues list

Make SNP distance matrix (i.e., heatmap data) downloadable as TSV [part] heatmap
#211 opened Oct 6, 2022 by sidneymbell
@sidneymbell
Wire up mrca URL query param to state
#209 opened Sep 30, 2022 by sidneymbell Integration prep
@sidneymbell
Magic button for selecting clade [part] cluster selection & validation Clade selectors & filters; clustering methods
#208 opened Sep 30, 2022 by sidneymbell Post-launch fit & finish
@sidneymbell
Report accordions [part] report text / copy
#207 opened Sep 30, 2022 by sidneymbell Post-launch fit & finish
@sidneymbell
Adjust epi curve, geo subclades and sampling bias to show as much as we can with partial geo data [part] epi curve [part] report text / copy [part] sampling table [type] scientific consideration Involves scientific problem-solving or decision making
#206 opened Sep 30, 2022 by sidneymbell
@sidneymbell
[Bug?] Galago doesn't like UShER JSON (yet) [type] bug Something isn't working
#204 opened Sep 29, 2022 by AngieHinrichs Integration prep
@sidneymbell
11
Make "Analyze your data in Galago" dialog title bolder/larger
#198 opened Sep 7, 2022 by Janeece Post-launch fit & finish
Add a way for users to cancel/close "Analyze Your Data" dialog
#195 opened Sep 7, 2022 by Janeece Post-launch fit & finish
Consider enabling clade selection by clicking on an internal node in the tree / network diagram [part] cluster selection & validation Clade selectors & filters; clustering methods [part] tree / network [type] ideas for future extensions Large-ish things that are not on the current roadmap, but might be worked on in the future
#194 opened Sep 7, 2022 by sidneymbell
Add in the "daylight" algorithm for unrooted tree layouts [part] tree / network
#193 opened Sep 7, 2022 by sidneymbell
Clean up residual wonkiness in tree layout [part] tree / network
#192 opened Sep 7, 2022 by sidneymbell
Make the clade selector controls visible on both the scatterplot and tree view [part] tree / network
#191 opened Sep 6, 2022 by sidneymbell
Add tickmarks to branches every N mutations [part] tree / network
#190 opened Sep 6, 2022 by sidneymbell
3 tasks
@sidneymbell
Rewrite sampling bias insight for other pathogens [part] report text / copy [type] scientific consideration Involves scientific problem-solving or decision making
#181 opened Aug 31, 2022 by sidneymbell
@sidneymbell
CI/CD -- Basic status check as part of PR, require pass to merge [theme] eng excellence [type] Launch detritus Stuff that came up during launch process
#178 opened Aug 24, 2022 by vincent-czi Launch cleanup & misc eng excellence
@vincent-czi
[Bug] Favicon not displaying on deployed GitHub Pages [type] bug Something isn't working [type] Launch detritus Stuff that came up during launch process
#174 opened Aug 19, 2022 by vincent-czi
Pop a tiny spinner next to the cluster selection module while computing clusters with Introduction Weight Heuristic design input requested [part] cluster selection & validation Clade selectors & filters; clustering methods
#165 opened Aug 2, 2022 by sidneymbell
1
Allow user to add epi metadata from the main app screen [theme] general display E.g. margins, layout, etc
#162 opened Aug 2, 2022 by sidneymbell
Allow users to select different location of interest (home_geo) within the app interface [theme] general display E.g. margins, layout, etc [type] ideas for future extensions Large-ish things that are not on the current roadmap, but might be worked on in the future
#161 opened Aug 2, 2022 by sidneymbell
[Bug] state gets confused when user (1) loads demo (2) back button (3) uploads data Blocker for launch [type] bug Something isn't working
#157 opened Jul 27, 2022 by sidneymbell Launch cleanup & misc eng excellence
@vincent-czi
5
Add more organization to the report [part] report text / copy [source] design review [theme] general display E.g. margins, layout, etc
#153 opened Jul 27, 2022 by sidneymbell
Once MUI has a component available for file picker buttons, use them [source] design review [theme] general display E.g. margins, layout, etc
#152 opened Jul 27, 2022 by sidneymbell
Add tooltip callout to point users to where to start [source] design review
#148 opened Jul 27, 2022 by sidneymbell
Make the banner smaller [source] design review
#144 opened Jul 27, 2022 by sidneymbell
Infer whether branch lengths are given in number of mutations (whole numbers) or subs/site (decimals) and convert to N mutations if necessary [type] scientific consideration Involves scientific problem-solving or decision making
#141 opened Jul 18, 2022 by sidneymbell Post-launch fit & finish
@sidneymbell
ProTip! Follow long discussions with comments:>50.