fix: instrument timing for slow requests

[Bento007]

Reason for Change

• Added to help debug bug(curation api): 504 returned from GET collection and datasets #7190
• to make it easier to measure how long operations take on the backend

Changes

• Add a class to measure how long a group of code takes and output to logs
• Add request info to the response log. This makes it easier to track what endpoint cause an error.

Testing steps

• Verified timing logs are printed.
• verified the request info was in the response log.

[github-actions]

Deployment Summary

• backend_url: https://pr-7217-backend.rdev.single-cell.czi.technology
• backend_de_url: https://pr-7217-backend-de.rdev.single-cell.czi.technology
• backend_wmg_url: https://pr-7217-backend-wmg.rdev.single-cell.czi.technology
• frontend_url: https://pr-7217-frontend.rdev.single-cell.czi.technology
• delete_db_task_definition_arn: arn:aws:ecs:us-west-2:***:task-definition/dp-rdev-pr-7217-deletion:1
• migrate_db_task_definition_arn: arn:aws:ecs:us-west-2:***:task-definition/dp-rdev-pr-7217-migration:1

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 92.86%. Comparing base (aa6815e) to head (d7b0505).

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #7217      +/-   ##
==========================================
+ Coverage   92.84%   92.86%   +0.01%     
==========================================
  Files         192      192              
  Lines       16340    16376      +36     
==========================================
+ Hits        15171    15207      +36     
  Misses       1169     1169              

Flag	Coverage Δ
unittests	92.86% <100.00%> (+0.01%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

[nayib-jose-gloria]

we should look into using datadog tracing for this long-term, but short-term this seems reasonable

[Bento007]

I wonder if we can do this already with datadog

[Bento007]

I wonder if we can do this already with datadog

It looks like it can.

I'd rather not add the overhead in this case.