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Owi integration #531

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Commits on Nov 23, 2021

  1. Added storm type specification

    @cjeffr
    cjeffr committed Nov 23, 2021
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Commits on Nov 27, 2021

  1. Added read_netcdf capability, puts arrays into storm object

    @cjeffr
    cjeffr committed Nov 27, 2021
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Commits on Nov 28, 2021

  1. Added subroutines to interpolate data in time and function to get cur… 

    …rent index based on time step
    @cjeffr
    cjeffr committed Nov 28, 2021
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Commits on Nov 29, 2021

  1. Added bilinear interpolation for wind velocities and pressure, added … 

    …u and v wind directions to storm object
    @cjeffr
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  2. Finished generalizing interpolation and error cleanup

    @cjeffr
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  3. Fixed data type mismatch in set_owi_fields, added set_owi_fields to s… 

    …et_data_fields in storm_module.f90
    @cjeffr
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  4. Added OWI to storm_spec_dict_mapping in data.py

    @cjeffr
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  5. Fixed surge.data read to include negative integers

    @cjeffr
    cjeffr committed Nov 29, 2021
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  6. Fixed missing comma

    @cjeffr
    cjeffr committed Nov 29, 2021
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  7. Changed storm_location to only search for location on HWRF data deriv… 

    …ed storms
    @cjeffr
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  8. fixed typo

    @cjeffr
    cjeffr committed Nov 29, 2021
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Commits on Dec 3, 2021

  1. Fixed how data_storm_module is called so that its in the correct order

    @cjeffr
    cjeffr committed Dec 3, 2021
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  2. Added type -2 to spec dict

    @cjeffr
    cjeffr committed Dec 3, 2021
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Commits on Dec 10, 2021

  1. got owi wind field working and ready for a test case

    @cjeffr
    cjeffr committed Dec 10, 2021
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Commits on Dec 13, 2021

  1. Fixed a typo in the linear interpolation for time

    @cjeffr
    cjeffr committed Dec 13, 2021
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  2. Removed reading speed from netcdf file, geoclaw can calculate itself 

    Cleaned up code by re-arranging subroutines into a more logical order
Added comments
    @cjeffr
    cjeffr committed Dec 13, 2021
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  3. Modified makefile to automatically turn on openmp and use netcdf 

    Added lines to use breach_module.f90 if breaching is desired
    @cjeffr
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Commits on Dec 20, 2021

  1. Added logic for ghost cells to use the boundary values when x and y a… 

    …re outside the boundaries
    @cjeffr
    cjeffr committed Dec 20, 2021
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Commits on Dec 27, 2021

  1. Added RAMP Function to smooth out edges of storm

    @cjeffr
    cjeffr committed Dec 27, 2021
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Commits on Dec 30, 2021

  1. Added .nc files to gitignore

    @cjeffr
    cjeffr committed Dec 30, 2021
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  2. Added RAMP function and ability to read eye location from storm file,… 

    … cleaned up code
    @cjeffr
    cjeffr committed Dec 30, 2021
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  3. Changed data.py to use OWI rather than oceanweather in the storm data… 

    … type dictionary
    @cjeffr
    cjeffr committed Dec 30, 2021
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Commits on Jan 5, 2022

  1. Fixed an in out to inout

    @cjeffr
    cjeffr committed Jan 5, 2022
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Commits on Jan 10, 2022

  1. Fixed eye_loc (sloc) interpolation

    @cjeffr
    cjeffr committed Jan 10, 2022
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  2. Updated setrun and setplot for running synthetic storm

    @cjeffr
    cjeffr committed Jan 10, 2022
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  3. Removed synthetic tests

    @cjeffr
    cjeffr committed Jan 10, 2022
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Commits on Jan 11, 2022

  1. Removed a modified file from PR

    @cjeffr
    cjeffr committed Jan 11, 2022
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  2. Removed whitespace modified files from PR

    @cjeffr
    cjeffr committed Jan 11, 2022
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Commits on Feb 7, 2022

  1. Delete modules.xml 

    Remove extraneous files
    @mandli
    mandli authored Feb 7, 2022
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  2. Delete geoclaw.iml 

    Remove extraneous files
    @mandli
    mandli authored Feb 7, 2022
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  3. Delete profiles_settings.xml 

    Remove extraneous files
    @mandli
    mandli authored Feb 7, 2022
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Commits on Feb 22, 2022

  1. Uploaded a data style storm example

    @cjeffr
    cjeffr committed Feb 22, 2022
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  2. Merge branch 'OWI_integration' of github.com:cjeffr/geoclaw into OWI_… 

    …integration
    @cjeffr
    cjeffr committed Feb 22, 2022
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Commits on Nov 9, 2023

  1. Merge branch 'clawpack:master' into OWI_integration

    @cjeffr
    cjeffr authored Nov 9, 2023
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Commits on Jan 8, 2024

  1. Updated data_storm_module and storm_module to read storm size from ne… 

    …tcdf
    @cjeffr
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  2. Added data derived storm characterization to storm.py and helper func… 

    …tions to data_storms.py. These functions allow reading in an oceanweather format style file and exports a netcdf that can be read into data_storms_module.f90
    @cjeffr
    cjeffr committed Jan 8, 2024
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  3. Working on fixing ramp function for smoothing edges

    @cjeffr
    cjeffr committed Jan 8, 2024
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  4. Fixing minor bugs in data_storms and storm.py changes

    @cjeffr
    cjeffr committed Jan 8, 2024
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  5. Commented out post_process_data to verify storm reconstruction

    @cjeffr
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  6. Updated pressure target_value

    @cjeffr
    cjeffr committed Jan 8, 2024
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  7. Commented out manually calculated values not included in original data

    @cjeffr
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  8. Removed unnecessary routines for calculating storm radius and distanc… 

    …e from eye for data_derived storm inputs
    @cjeffr
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  9. Cleaned up unused code and variables, added comments and docstrings t… 

    …o explain DataDerivedStorms class
    @cjeffr
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  10. Cleaned up unused code and variables, added comments and docstrings t… 

    …o explain parsing od data from OWI format
    @cjeffr
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  11. Updated storm.py to update Dataclass names to pep8 format

    @cjeffr
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  12. Added script to handle the storm data parsing

    @cjeffr
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  13. Makefile for M1 mac with netcdf FFLAGS installed via homebrew

    @cjeffr
    cjeffr committed Jan 8, 2024
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  14. removed .ipynb for testing the storm object

    @cjeffr
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  15. Added setrun to example folder

    @cjeffr
    cjeffr committed Jan 8, 2024
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  16. Added write to OWI format example to data_storms.py

    @cjeffr
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  17. clip netcdf including ghost cells

    @bolliger32 @cjeffr
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  18. handle large topo arrays

    @bolliger32 @cjeffr
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  19. undo autoformatting in topo_update

    @cjeffr
    Ian Bolliger authored and cjeffr committed Jan 8, 2024
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  20. try removing format changes again

    @cjeffr
    Ian Bolliger authored and cjeffr committed Jan 8, 2024
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  21. examples testing checkpt 4 option, and implemented in tick

    @mjberger @cjeffr
    mjberger authored and cjeffr committed Jan 8, 2024
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  22. implemented STOP feature if file STOP.txt found in working directory

    @mjberger @cjeffr
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  23. remove topo_module variables from calling sequence of cellgridintegrate 

    They don't need to be in the calling sequence since setaux already assumes
they are in topo_module. Some integers were implicitly declared as
(kind=4) whereas recent changes to topo_module.f90 in e8afd6b declared
them as (kind=8) to deal with larger topo files.
    @rjleveque @cjeffr
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  24. remove xcell,ycell from cellgridintegrate

    @rjleveque @cjeffr
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  25. change line endings from Windows CRLF to Unix LF in setaux.f90

    @rjleveque @cjeffr
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  26. Compute new_ntogo rather than incrementing by 1 

    In some tests this leads to fewer ntogo errors (too many dt reductions)
    @rjleveque @cjeffr
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  27. Changes to tick.f with minor fix and debug plot statements

    @rjleveque @cjeffr
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  28. Change tick.f to also output frames when it dies with too many dt red… 

    …uctions
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  29. we no longer do a checkpoint for ntogo error since not at end of coar… 

    …se timestep
    @rjleveque @cjeffr
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  30. change filename STOP.txt to STOP for stopping calculation

    @rjleveque @cjeffr
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  31. Add nonuniform_grid_tools to meson.build

    @carlosmunozmoncayo @cjeffr
    carlosmunozmoncayo authored and cjeffr committed Jan 8, 2024
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  32. fix problems in util.bearing

    @rjleveque @cjeffr
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  33. add util.gctransect function to compute transect points on a great ci… 

    …rcle

also kmltools.transect2kml to make a kml file displaying them.
Sample usage for transect from Tohoku to Crescent City:
    xtrans,ytrans = util.gctransect(142,37,-124.2,41.74,50,'W')
    kmltools.transect2kml(xtrans,ytrans)
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  34. fix docstring

    @rjleveque @cjeffr
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  35. improve gctransect doc string and remove debugging

    @rjleveque @cjeffr
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  36. Fix ij index into dtopowork in set_eta_init 

    Fix a bug introduced when converting from int*4 to int*8.
    @rjleveque @cjeffr
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  37. added netdf flags to makefile to prevent netcdf errors

    @cjeffr
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Commits on Jan 10, 2024

  1. Reverted data_storms.py to a previous version

    @cjeffr
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  2. Fixed a few bugs in storm.py and data_storms.py, added a new example … 

    …notebook into the isaac_data_derived example and updated the isaac.PRE and isaac.WIN in the scratch directory

;
    @cjeffr
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Commits on Feb 5, 2024

  1. Moved data_derived_storms.ipynb to apps repo

    @cjeffr
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Commits on Sep 23, 2024

  1. Resolved merge conflict between upstream/master and OWI_integration

    @cjeffr
    cjeffr committed Sep 23, 2024
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Commits on Oct 24, 2024

  1. Removed unused storm params: eye_loc, mwr, radius

    @cjeffr
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  2. changed set_storm original to set_netcdf_storm to start integrating f… 

    …ixed width set_fortran_storm
    @cjeffr
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  3. added fixed width data storm parsing routines

    @cjeffr
    cjeffr committed Oct 24, 2024
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  4. added set_storm to choose between which data_routines to access

    @cjeffr
    cjeffr committed Oct 24, 2024
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  5. fixed some variable names

    @cjeffr
    cjeffr committed Oct 24, 2024
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  6. fixed variable names

    @cjeffr
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Commits on Oct 25, 2024

  1. bug fixes

    @cjeffr
    cjeffr committed Oct 25, 2024
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  2. Added handling of fixed width datafile inputs

    @cjeffr
    cjeffr committed Oct 25, 2024
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Commits on Oct 29, 2024

  1. removed some unnecessary changes

    @cjeffr
    cjeffr committed Oct 29, 2024
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  2. removed unused variables

    @cjeffr
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Commits on Nov 11, 2024

  1. added netcdf conditional checking adn fixed timing issues

    @cjeffr
    cjeffr committed Nov 11, 2024
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Commits on Nov 13, 2024

  1. changed how find_nearest works to get better edge cases

    @cjeffr
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  2. find_nearest error fixes

    @cjeffr
    cjeffr committed Nov 13, 2024
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  3. updating bilinear interpolation edge case handling

    @cjeffr
    cjeffr committed Nov 13, 2024
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Commits on Nov 18, 2024

  1. Trying an adaptive weighted bilinear interpolation routine

    @cjeffr
    cjeffr committed Nov 18, 2024
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Commits on Nov 19, 2024

  1. Updated comments, removed extra unused code

    @cjeffr
    cjeffr committed Nov 19, 2024
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  2. Updated storm types to include data_derived ascii vs netcdf

    @cjeffr
    cjeffr committed Nov 19, 2024
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Commits on Nov 20, 2024

  1. Added ability to read from control file with wind and pressure file n… 

    …ames

Added control file format
cleaned up code added comments and removed redundancies
    @cjeffr
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Commits on Nov 21, 2024

  1. added landfall variable to calculate times as seconds from landfall

    @cjeffr
    cjeffr committed Nov 21, 2024
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  2. updated .win and .pre to the newest version of the data and updated p… 

    …arse_storm_data.py to include the landfall date
    @cjeffr
    cjeffr committed Nov 21, 2024
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Commits on Nov 25, 2024

  1. Merge remote-tracking branch 'origin/master' into OWI_integration

    @cjeffr
    cjeffr committed Nov 25, 2024
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  2. tested both netcdf and ascii input files

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    cjeffr committed Nov 25, 2024
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  3. made isaac.info generic for other users

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    cjeffr committed Nov 25, 2024
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Commits on Dec 3, 2024

  1. Added new tests for data_derived storm products and updated data_stor… 

    …m_module.f90 to use a relative path with get_environment variable
    @cjeffr
    cjeffr committed Dec 3, 2024
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