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Issues list

Enable clinvar messages to be ingested from kafka out of order clinvar Clinvar data exchange and reporting enhancement New feature or request
#775 opened May 31, 2023 by theferrit32
@theferrit32
Handle 'conflicting data from submitters' clinsig value in clinical assertions
#762 opened Apr 6, 2023 by theferrit32
Some variation descriptors do not have a variant bug Something isn't working clinvar Clinvar data exchange and reporting
#748 opened Feb 27, 2023 by theferrit32
1
2
Resolve ClinVar Haplotype/Genotype variations to non-Text when possible clinvar Clinvar data exchange and reporting
#726 opened Dec 22, 2022 by theferrit32
Handle more copy number expression cases clinvar Clinvar data exchange and reporting
#700 opened Oct 31, 2022 by theferrit32
2
Parse evidence document IDs out of clinical assertion nested structures. clinvar Clinvar data exchange and reporting
#691 opened Oct 25, 2022 by theferrit32
Devise a strategy for an interactive sepio ontology query engine
#682 opened Oct 19, 2022 by toneillbroad
1
Recompiling the RDFResource class breaks protocol matching on existing RDFResource objects in memory enhancement New feature or request
#656 opened Sep 7, 2022 by theferrit32
Add a way to more easily generate a JSON-LD context from a set of keywords+prefixes
#654 opened Sep 7, 2022 by theferrit32
Add VRS copy number variation classes to GraphQL
#648 opened Aug 16, 2022 by theferrit32
1
Resolve error level clojure-lint messages
#594 opened Jun 23, 2022 by theferrit32
Apply cljfmt formatting
#593 opened Jun 23, 2022 by theferrit32
Identify curations relating to genomic features by cytoband range
#575 opened Jun 13, 2022 by tnavatar
Identify curations relating to gene features by coordinate range
#574 opened Jun 13, 2022 by tnavatar
Add base data migration
#521 opened May 9, 2022 by theferrit32
Document procedure for Kafka access for new devs
#490 opened Apr 11, 2022 by tnavatar
1
Make Google API access less horrible to set up
#489 opened Apr 11, 2022 by tnavatar
1
Update README.md with additional information and references to existing documentation files
#488 opened Apr 11, 2022 by tnavatar
@theferrit32
Create functional defaults for Genegraph environment variables
#487 opened Apr 11, 2022 by tnavatar
Improve Genegraph new developer experience Epic
#486 opened Apr 11, 2022 by tnavatar
1
Add cache eviction to outgoing HTTP caching nice to have
#478 opened Mar 28, 2022 by theferrit32
Refactor JSON-LD context to separate repository
#470 opened Mar 23, 2022 by theferrit32
Genegraph in web mode appears to be starting a kafka publisher bug Something isn't working stale
#453 opened Mar 1, 2022 by toneillbroad
Create an integration test for validating variation transformer
#449 opened Feb 25, 2022 by KelseaChang5
Add pass-through JSON-LD transformer for reading message content as-is into Jena
#444 opened Feb 22, 2022 by theferrit32
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