pipeline for Quidel flu test #4644
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| push: | |
| branches: [main, prod] | |
| pull_request: | |
| types: [opened, synchronize, reopened, ready_for_review] | |
| branches: [main, prod] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-20.04 | |
| if: github.event.pull_request.draft == false | |
| strategy: | |
| matrix: | |
| include: | |
| - package: "_delphi_utils_python" | |
| dir: "delphi_utils" | |
| - package: "changehc" | |
| dir: "delphi_changehc" | |
| - package: "claims_hosp" | |
| dir: "delphi_claims_hosp" | |
| - package: "doctor_visits" | |
| dir: "delphi_doctor_visits" | |
| - package: "google_symptoms" | |
| dir: "delphi_google_symptoms" | |
| - package: "hhs_hosp" | |
| dir: "delphi_hhs" | |
| - package: "nchs_mortality" | |
| dir: "delphi_nchs_mortality" | |
| - package: "nssp" | |
| dir: "delphi_nssp" | |
| - package: "nwss_wastewater" | |
| dir: "delphi_nwss" | |
| - package: "quidel_covidtest" | |
| dir: "delphi_quidel_covidtest" | |
| - package: "quidel_flutest" | |
| dir: "delphi_quidel_flutest" | |
| - package: "sir_complainsalot" | |
| dir: "delphi_sir_complainsalot" | |
| - package: "nhsn" | |
| dir: "delphi_nhsn" | |
| defaults: | |
| run: | |
| working-directory: ${{ matrix.package }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.8 | |
| cache: "pip" | |
| cache-dependency-path: "pyproject.toml" | |
| - name: Install testing dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pylint pytest pydocstyle wheel | |
| - name: Install | |
| run: | | |
| make install-ci | |
| - name: Lint | |
| run: | | |
| make lint | |
| - name: Test | |
| run: | | |
| make test | |
| - uses: akaihola/[email protected] | |
| with: | |
| options: "--check --diff --isort --color" | |
| src: "${{ matrix.package }}/${{ matrix.dir }}" | |
| version: "~=2.1.1" |