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Release covidcast-indicators 0.3.57 #2086

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merged 18 commits into from
Dec 16, 2024

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@github-actions github-actions bot commented Dec 11, 2024

Releasing:

  • covidcast-indicators 0.3.57
  • delphi-utils 0.3.26 (new)

Deployment changes:

Indicators changes:

Things to watch out for:

  • introduction of NHSN source & associated signals
    • enable job in cronicle and make sure it runs w/o error
    • check to make sure these logs show in elastic
  • new NSSP signals
  • make sure backup csv files are showing up in the right place on prod for: nchs_mortality, nhsn, nssp
  • some logging changes (shouldnt break anything)

melange396 and others added 18 commits September 12, 2024 17:02
* add helper fn in utils to save backup data to csv

* use helper to save nchs data to disk right after pulling

* add backup dir param

* import backup utility

* update arg name

* add gzip + fix old json template log + remove table_name

* fix current tests to take backup dirs and custom_run flag into account

* add logging

* fix log getsize of backup file

* lint

* lint

* lint

* lint

* add backup test

* remove deep copy

---------

Co-authored-by: minhkhul <[email protected]>
Co-authored-by: minhkhul <[email protected]>
* first implementation

* add testing and more robust conditions

* revert unneeded change

* only retry once and added other applicable error

* lint

* fixed test

* lint
* base changes

* backup dir

* add test

* lint

* adding tests for create_backup_csv

* also writing into parquet

* adding pyarrow as dependency

* clean test

* adjusting logic to match new naming format and chunking

* moving dependencies

* lint

* made test more robust

* fix test

* clean up

* adding parqut into gitignore

* placate the linter

---------

Co-authored-by: Amaris Sim <[email protected]>
* more logging and cleaned logic

* changed variable names

* lint

* add param to test

* fix test

* consistent location for custom run flag
* base changes

* lint

* lint

* add test

* fix hhs bug + doc to readme + fix signal grouping

* fix weird nan

* logging + error details

* test data sync

* typo in pull.py

* region to lower

* add log

* fix str bug

* add backup data mechanism

* adjust details.md

* appease linter

* add tests for secondary source backup

* Update signal names to _2023RVR in constants.py

* clarify _2023RVR signals in DETAILS.md
* first implimentation

* figuring out metric/sensor to use

* first take

* working on test

* added preliminary data source

* adding indicator for gitaction

* lint

* replace with setup.py

* more lint

* fixed date range for test

* lint

* Update DETAILS.md

* fix output data

* analysis in progress

* lint and suggestions

* more analysis

* add hhs geo aggregate

* more analysis

* update DETAILS.md

* Update nhsn/params.json.template

Co-authored-by: minhkhul <[email protected]>

* Update nhsn/params.json.template

Co-authored-by: minhkhul <[email protected]>

* cleaning up anaylsis

* rename geo_id column name

* suggested / needed to deploy

* adding default locations for deployment

* fix geo aggregation for hhs

Co-authored-by: minhkhul <[email protected]>

* Update nhsn/params.json.template

Co-authored-by: minhkhul <[email protected]>

* lint

* needed to add hhs in to geo for tests

* fixed and added more plots

* cleaning up notebook and adding details

* new signal name

* needed to update the type dict also

---------

Co-authored-by: minhkhul <[email protected]>
@github-actions github-actions bot added the chore label Dec 11, 2024
@github-actions github-actions bot requested a review from melange396 December 11, 2024 16:34
@minhkhul minhkhul merged commit 7ac28d4 into prod Dec 16, 2024
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5 participants