use epidatpy doc site for links #3792
Workflow file for this run
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| name: CI | |
| on: | |
| push | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: mkdir -p repos/undefx | |
| - name: Checkout undefx/py3tester | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: undefx/py3tester | |
| path: repos/undefx/py3tester | |
| - name: Checkout undefx/undef-analysis | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: undefx/undef-analysis | |
| path: repos/undefx/undef-analysis | |
| - run: mkdir -p repos/delphi | |
| - name: Checkoutcmu-delphi/operations | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: cmu-delphi/operations | |
| path: repos/delphi/operations | |
| - name: Checkout cmu-delphi/utils | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: cmu-delphi/utils | |
| path: repos/delphi/utils | |
| - name: Checkout cmu-delphi/github-deploy-repo | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: cmu-delphi/github-deploy-repo | |
| path: repos/delphi/github-deploy-repo | |
| - name: Checkout THIS REPO | |
| uses: actions/checkout@v2 | |
| with: | |
| path: repos/delphi/delphi-epidata | |
| - name: Checkout cmu-delphi/flu-contest | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: cmu-delphi/flu-contest | |
| path: repos/delphi/flu-contest | |
| - name: Checkout cmu-delphi/nowcast | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: cmu-delphi/nowcast | |
| path: repos/delphi/nowcast | |
| - name: Build docker images | |
| run: | | |
| docker build -t delphi_database_epidata -f ./repos/delphi/delphi-epidata/dev/docker/database/epidata/Dockerfile . | |
| docker build -t delphi_web_python -f repos/delphi/delphi-epidata/dev/docker/python/Dockerfile . | |
| sudo docker build -t delphi_redis -f repos/delphi/delphi-epidata/dev/docker/redis/Dockerfile . | |
| cd ./repos/delphi/delphi-epidata | |
| docker build -t delphi_web_epidata -f ./devops/Dockerfile . | |
| cd ../../../ | |
| # MODULE_NAME specifies the location of the `app` variable, the actual WSGI application object to run. | |
| # see https://github.com/tiangolo/meinheld-gunicorn-docker#module_name | |
| - name: Start database and Redis services | |
| run: | | |
| docker network create --driver bridge delphi-net | |
| docker run --rm -d -p 13306:3306 --network delphi-net --name delphi_database_epidata --cap-add=sys_nice delphi_database_epidata | |
| docker run --rm -d -p 6379:6379 --network delphi-net --env "REDIS_PASSWORD=1234" --name delphi_redis delphi_redis | |
| - run: | | |
| wget https://raw.githubusercontent.com/eficode/wait-for/master/wait-for | |
| chmod +x wait-for | |
| ./wait-for localhost:13306 -- echo 'ready' | |
| sleep 10s | |
| - name: Start delphi_web_epidata | |
| run: | | |
| docker run --rm -d -p 10080:80 --env "MODULE_NAME=delphi.epidata.server.main" --env "SQLALCHEMY_DATABASE_URI=mysql+mysqldb://user:pass@delphi_database_epidata:3306/epidata" --env "FLASK_SECRET=abc" --env "FLASK_PREFIX=/epidata" --env "REDIS_HOST=delphi_redis" --env "REDIS_PASSWORD=1234" --env "API_KEY_REGISTER_WEBHOOK_TOKEN=abc" --env "API_KEY_ADMIN_PASSWORD=test_admin_password" --env "TESTING_MODE=True" --network delphi-net --name delphi_web_epidata delphi_web_epidata | |
| docker ps | |
| - name: Run Unit Tests | |
| run: | | |
| docker run --rm --network delphi-net --env "SQLALCHEMY_DATABASE_URI=mysql+mysqldb://user:pass@delphi_database_epidata:3306/epidata" --env "FLASK_SECRET=abc" delphi_web_python python -m pytest --import-mode importlib repos/delphi/delphi-epidata/tests | |
| - name: Run Integration Tests | |
| run: | | |
| docker run --rm --network delphi-net delphi_web_python python -m pytest --import-mode importlib repos/delphi/delphi-epidata/integrations | |
| - name: Clean Up | |
| run: | | |
| docker stop delphi_database_epidata delphi_web_epidata delphi_redis | |
| docker network remove delphi-net | |
| build_js_client: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| working-directory: src/client/packaging/npm | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - uses: actions/setup-node@v2 | |
| with: | |
| node-version: '16.x' | |
| - name: Cache Node.js modules | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.npm # npm cache files are stored in `~/.npm` on Linux/macOS | |
| key: ${{ runner.OS }}-node2-${{ hashFiles('**/package-lock.json') }} | |
| restore-keys: | | |
| ${{ runner.OS }}-node2- | |
| - run: npm ci | |
| - run: npm test | |
| image: | |
| needs: build | |
| # only on main and dev branch | |
| # TODO: #1112 Remove `|| github.ref == 'refs/heads/api-keys'` after transition to production status. | |
| if: github.ref == 'refs/heads/main' || github.ref == 'refs/heads/dev' || github.ref == 'refs/heads/api-keys' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ghcr.io | |
| username: cmu-delphi-deploy-machine | |
| password: ${{ secrets.CMU_DELPHI_DEPLOY_MACHINE_PAT }} | |
| - name: Build Image | |
| env: | |
| DEVOPS_DOCKER_FILE: ./devops/Dockerfile | |
| run: | | |
| docker build -t repo --file ${DEVOPS_DOCKER_FILE} . | |
| - name: Resolve Tag | |
| id: tagname | |
| run: | | |
| baseRef="${GITHUB_REF#*/}" | |
| imageTag="${baseRef#*/}" | |
| if [ "$imageTag" = "main" ] ; then | |
| imageTag="latest" | |
| fi | |
| echo "::set-output name=tag::$imageTag" | |
| echo "::set-output name=repo::ghcr.io/${{ github.repository }}" | |
| - name: Push Dev Tag | |
| run: | | |
| docker tag repo ${{ steps.tagname.outputs.repo }}:${{ steps.tagname.outputs.tag }} | |
| docker push ${{ steps.tagname.outputs.repo }}:${{ steps.tagname.outputs.tag }} | |
| # - name: Extract version | |
| # if: startsWith(github.ref, 'refs/heads/main') | |
| # id: extract_version | |
| # run: node -pe "'::set-output name=version::' + require('./package.json').version" | |
| - name: Trigger Webhook | |
| run: | | |
| # trigger a webhook update | |
| curl -H "Authorization: Bearer ${{ secrets.DELPHI_DEPLOY_WEBHOOK_TOKEN }}" \ | |
| -X POST ${{ secrets.DELPHI_DEPLOY_WEBHOOK_URL }} \ | |
| -H "Content-Type: application/x-www-form-urlencoded" \ | |
| -d "repository=${{ steps.tagname.outputs.repo }}&tag=${{ steps.tagname.outputs.tag }}" | |
| # - name: Push Version Tag Tag | |
| # if: startsWith(github.ref, 'refs/heads/main') | |
| # run: | | |
| # docker tag repo ${{ steps.tagname.outputs.repo }}:v${{ steps.extract_version.outputs.version }} | |
| # docker push ${{ steps.tagname.outputs.repo }}:v${{ steps.extract_version.outputs.version }} |