Code

v0.0.6 to main#247

Code

Merged

dajmcdon merged 67 commits intomaincmu-delphi/epipredict:mainfrom v0.0.6cmu-delphi/epipredict:v0.0.6Copy head branch name to clipboardOct 19, 2023

+1,948-445

Commits

Commits on Sep 14, 2023

• start CDC baseline layer

  dajmcdon

  committed
  8a1e2d6

Commits on Sep 22, 2023

• upgrade enframer

  dajmcdon

  committed
  cea1599

Commits on Sep 23, 2023

• functions, remains to check validity

  dajmcdon

  committed
  d606741

Commits on Sep 24, 2023

• correct symmetrization, enhance documentation of the "ahead" param in flatline_forecaster().

  dajmcdon

  committed
  7294c00

• better defaults, cli, pred is scalar in propagate_samples

  dajmcdon

  committed
  f18e88f

• redocument

  dajmcdon

  committed
  d6a28f3

• run styler

  dajmcdon

  committed
  237ec50

• redocument after styling

  dajmcdon

  committed
  c13b83e

Commits on Sep 25, 2023

• example plotting with ggplot2 handled correctly

  dajmcdon

  committed
  16f6c2c

• finish quantile pivotting helpers, redocument

  dajmcdon

  committed
  ce0b180

• fix extra check note.

  dajmcdon

  committed
  f97166b

• run styler

  dajmcdon

  committed
  9dd0a2c

Commits on Sep 29, 2023

• add lifecycle, deprecate pivot_quantiles.

  dajmcdon

  committed
  16139ff

Commits on Oct 1, 2023

• renaming in dist_quantiles

  dajmcdon

  committed
  d242eed

• much renaming to quantile_values

  dajmcdon

  committed
  d2eae48

• redocument

  dajmcdon

  committed
  f04264c

• tests pass

  dajmcdon

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  da6489f

• all checks pass, rename complete

  dajmcdon

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  07600a2

Commits on Oct 2, 2023

• quantile_values -> quantile_levels

  dajmcdon

  committed
  cdfd0a8

• redocument, run styler

  dajmcdon

  committed
  8463a42

Commits on Oct 4, 2023

• working cdc baseline

  dajmcdon

  committed
  c9b4667

• add cdc baseline to pkgdown

  dajmcdon

  committed
  d59a691

• local checks pass

  dajmcdon

  committed
  21b4c85

• CI: triggering the CI via commit is not ideal

  dsweber2

  committed
  10cde4b

• Fix incomplete symmetrize + document it

  brookslogan

  committed
  1f58e67

• document()

  brookslogan

  committed
  fe31a79

• Fix death rate 7dav -> weekly sum conversion in example

  brookslogan

  committed
  93fac1a

• Copyediting, roxygen link styling, formatting

  brookslogan

  committed
  0516836

• finish quantile pivotting helpers, redocument

  dajmcdon

  committed
  965155d

• fix extra check note.

  dajmcdon

  committed
  1cf5dff

• add lifecycle, deprecate pivot_quantiles.

  dajmcdon

  committed
  1458ab0

• "Logical" -> "Scalar logical" as appropriate to match rest of docs

  brookslogan

  committed
  0905ba4

Commits on Oct 5, 2023

• add formatter to the correct branch

  dajmcdon

  committed
  6f14e6a

• Merge branch '240-quantile-pivot' of https://github.com/cmu-delphi/epipredict into 240-quantile-pivot

  dajmcdon

  committed
  0b9b537

• Merge branch 'cdc-baseline' of https://github.com/cmu-delphi/epipredict into cdc-baseline

  dajmcdon

  committed
  a33baae

• Speed up cdc baseline: quantile(...., names = FALSE)

  brookslogan

  committed
  b1c34cb

• CI: trying to change in a particular branch too

  dsweber2

  committed
  cf9a44e

• CI: needs to be on the target branch as well

  dsweber2

  committed
  5a33cd0

• CI: also needs to be on the branch

  dsweber2

  committed
  7358c13

• formatter works

  dajmcdon

  committed
  343add1

• local checks pass

  dajmcdon

  committed
  b5fe624

• Merge branch 'cdc-baseline' of https://github.com/cmu-delphi/epipredict into cdc-baseline

  dajmcdon

  committed
  bdbd3ee

• address @nmdefries comments

  dajmcdon

  committed
  169f764

• pass local checks

  dajmcdon

  committed
  8d1e47d

• Merge pull request #241 from cmu-delphi/240-quantile-pivot

  Show description for b2d1e11
  dajmcdon

  authored
  b2d1e11

• merge 241 / v0.0.6

  Show description for 0556b8c
  dajmcdon

  committed
  0556b8c

• complete the merge, local checks pass

  dajmcdon

  committed
  b8865c4

Commits on Oct 6, 2023

• Merge pull request #243 from cmu-delphi/242-quantile-renaming

  Show description for dacf6e7
  dajmcdon

  authored
  dacf6e7

• Merge pull request #245 from cmu-delphi/cdc-baseline

  Show description for 3ef79b9
  dajmcdon

  authored
  3ef79b9

• bump version, pass local checks

  dajmcdon

  committed
  df235d7

• bump news

  dajmcdon

  committed
  3b80989

Commits on Oct 18, 2023

• merge main, redocument

  Show description for 0f5537e
  dajmcdon

  committed
  0f5537e

• run styler

  dajmcdon

  committed
  f7d7612

• redocument

  dajmcdon

  committed
  8c72690

• remove point predictions. closes 249

  dajmcdon

  committed
  5a14a56

• closes #251

  dajmcdon

  committed
  31c61ba

• correct default args

  dajmcdon

  committed
  1e2c4d3

• redocument

  dajmcdon

  committed
  9206afa

Commits on Oct 19, 2023

• Merge pull request #254 from cmu-delphi/v0.0.6-cleanup

  Show description for 64a820d
  dshemetov

  authored
  64a820d

• add ... for baseline arg list

  dajmcdon

  committed
  ce45187

• check empty dots

  dajmcdon

  committed
  a13d1e8

• adjust authors

  dajmcdon

  committed
  8a9109f

• better error printing

  dajmcdon

  committed
  4eddf92

• file unused

  dajmcdon

  committed
  3d922c6

• redocument

  dajmcdon

  committed
  67a52a7

• rerun styler

  dajmcdon

  committed
  86b4c60

• fix styler action

  dajmcdon

  committed
  c0d9e9e