use cases_deaths_subset instead of covid_case_death_rates

cmu-delphi · Sep 17, 2024 · 779ec2a · 779ec2a
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Showing 9 changed files with 52 additions and 142 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -55,7 +55,6 @@ export(autoplot)
 export(cases_deaths_subset)
 export(clone)
 export(complete)
-export(covid_case_death_rates)
 export(covid_incidence_county_subset)
 export(covid_incidence_outliers)
 export(detect_outlr)

diff --git a/R/reexports.R b/R/reexports.R
@@ -151,24 +151,6 @@ delayedAssign("covid_incidence_outliers", epidatasets::covid_incidence_outliers)
 #' @export
 delayedAssign("jhu_confirmed_cumulative_num", epidatasets::jhu_confirmed_cumulative_num)
 
-#' @inherit epidatasets::covid_case_death_rates description source references title
-#' @inheritSection epidatasets::covid_case_death_rates Data dictionary
-#' @examples
-#' # Since this is a re-exported dataset, it cannot be loaded using
-#' # the `data()` function. `data()` looks for a file of the same name
-#' # in the `data/` directory, which doesn't exist in this package.
-#' # works
-#' epiprocess::covid_case_death_rates
-#'
-#' # works
-#' library(epiprocess)
-#' covid_case_death_rates
-#'
-#' # fails
-#' data(covid_case_death_rates, package = "epiprocess")
-#' @export
-delayedAssign("covid_case_death_rates", epidatasets::covid_case_death_rates)
-
 #' @inherit epidatasets::archive_cases_dv_subset description source references title
 #' @inheritSection epidatasets::archive_cases_dv_subset Data dictionary
 #' @examples

diff --git a/man/archive_cases_dv_subset.Rd b/man/archive_cases_dv_subset.Rd
diff --git a/man/cases_deaths_subset.Rd b/man/cases_deaths_subset.Rd
diff --git a/man/covid_case_death_rates.Rd b/man/covid_case_death_rates.Rd
diff --git a/man/covid_incidence_county_subset.Rd b/man/covid_incidence_county_subset.Rd
diff --git a/man/covid_incidence_outliers.Rd b/man/covid_incidence_outliers.Rd
diff --git a/man/jhu_confirmed_cumulative_num.Rd b/man/jhu_confirmed_cumulative_num.Rd
diff --git a/vignettes/correlation.Rmd b/vignettes/correlation.Rmd
@@ -23,8 +23,8 @@ library(dplyr)
 
 The data is included in this package (via the [`epidatasets` package](https://cmu-delphi.github.io/epidatasets/)) and can be loaded with:
 ```{r}
-x <- covid_case_death_rates %>%
-  select(geo_value, time_value, case_rate, death_rate) %>%
+x <- cases_deaths_subset %>%
+  select(geo_value, time_value, case_rate = case_rate_7d_av, death_rate = death_rate_7d_av) %>%
   arrange(geo_value, time_value)
 ```